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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SCMH1
Scm polycomb group protein homolog 1
Chromosome 1 · 1p34.2
NCBI Gene: 22955Ensembl: ENSG00000010803.18HGNC: HGNC:19003UniProt: A0A8Q3SHN2
31PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleoplasmprotein bindingheterochromatin formationnegative regulation of DNA-templated transcriptionintelligenceatrial fibrillationAbnormality of the skeletal systemmathematical ability
✦AI Summary

SCMH1 (Scm polycomb group protein homolog 1) is a mammalian homolog of the Drosophila Sex comb on midleg gene that functions as a component of Polycomb group (PcG) complexes involved in transcriptional repression 1. The protein contains characteristic domains including two 1(3)mbt domains and an SPM domain, sharing 41% identity with Drosophila Scm and 94% identity with its mouse counterpart 1. SCMH1 functions as an E3 ubiquitin ligase with dual substrate specificity, targeting both histone H2A for transcriptional silencing and geminin for stability regulation 2. As a substoichiometric component of PcG complex 1, SCMH1 provides an interaction domain for geminin and regulates the expression of direct PcG targets including Hoxb4 and Hoxa9 in hematopoietic cells 2. Interestingly, circular RNA derived from SCMH1 (circSCMH1) has emerged as therapeutically relevant in stroke recovery, promoting vascular repair through FTO-mediated m6A demethylation mechanisms 3 and enhancing neuroplasticity while inhibiting glial activation in stroke models 4. CircSCMH1 also regulates mitochondrial function by suppressing KMO expression through STAT5B binding 5. The regulation of circSCMH1 biogenesis itself is controlled by PTBP1, which inhibits back-splicing to reduce circSCMH1 production 6.

Sources cited
1
SCMH1 is a human homolog of Drosophila Scm with characteristic domains and high conservation with mouse counterpart
PMID: 10524249
2
SCMH1 functions as E3 ubiquitin ligase for histone H2A and geminin, regulating PcG target genes Hoxb4 and Hoxa9
PMID: 23207902
3
CircSCMH1 promotes vascular repair after stroke through FTO-mediated m6A demethylation mechanisms
PMID: 36717587
4
CircSCMH1 enhances neuroplasticity and inhibits glial activation in stroke recovery models
PMID: 32441115
5
CircSCMH1 regulates mitochondrial function by suppressing KMO expression through STAT5B binding
PMID: 39659575
6
PTBP1 regulates circSCMH1 biogenesis by inhibiting back-splicing
PMID: 41328340
Disease Associationsⓘ20
intelligenceOpen Targets
0.39Weak
atrial fibrillationOpen Targets
0.37Weak
Abnormality of the skeletal systemOpen Targets
0.33Weak
mathematical abilityOpen Targets
0.32Weak
complex regional pain syndromeOpen Targets
0.31Weak
smoking behaviorOpen Targets
0.29Weak
immune system diseaseOpen Targets
0.29Weak
biliary tract diseaseOpen Targets
0.28Weak
attention deficit hyperactivity disorderOpen Targets
0.27Weak
autism spectrum disorderOpen Targets
0.23Weak
chronic obstructive pulmonary diseaseOpen Targets
0.22Weak
cardiac arrhythmiaOpen Targets
0.20Weak
risk-taking behaviourOpen Targets
0.18Weak
cardioembolic strokeOpen Targets
0.16Weak
substance abuseOpen Targets
0.12Weak
smoking initiationOpen Targets
0.10Suggestive
open-angle glaucomaOpen Targets
0.09Suggestive
oral squamous cell carcinomaOpen Targets
0.08Suggestive
azoospermiaOpen Targets
0.07Suggestive
partial chromosome Y deletionOpen Targets
0.05Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
H2AL3Shared pathway100%H2AC21Shared pathway100%H2AC1Shared pathway100%AEBP2Shared pathway100%H2AC12Shared pathway100%L3MBTL2Shared pathway100%
Tissue Expression6 tissues
Heart
100%
Ovary
77%
Bone Marrow
51%
Lung
44%
Liver
36%
Brain
27%
Gene Interaction Network
Click a node to explore
SCMH1H2AL3H2AC21H2AC1AEBP2H2AC12L3MBTL2
PROTEIN STRUCTURE
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PDB2P0K · 1.75 Å · X-ray
View on RCSB ↗
RankingsWhere SCMH1 stands among ~20K protein-coding genes
  • #11,795of 20,598
    Most Researched31
Genes detectedSCMH1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
FTO-dependent m
PMID: 36717587
Nat Commun · 2023
1.00
2
Nose-to-Brain Delivery of Circular RNA SCMH1-Loaded Lipid Nanoparticles for Ischemic Stroke Therapy.
PMID: 40143778
Adv Mater · 2025
0.90
3
Extracellular Vesicle-Mediated Delivery of Circular RNA SCMH1 Promotes Functional Recovery in Rodent and Nonhuman Primate Ischemic Stroke Models.
PMID: 32441115
Circulation · 2020
0.80
4
Circular RNA SCMH1 suppresses KMO expression to inhibit mitophagy and promote functional recovery following stroke.
PMID: 39659575
Theranostics · 2024
0.70
5
The human homolog of Sex comb on midleg (SCMH1) maps to chromosome 1p34.
PMID: 10524249
Gene · 1999
0.60