HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
SEC11A
SEC11 homolog A, signal peptidase complex subunit
Chromosome 15 · 15q25.2-q25.3
NCBI Gene: 23478Ensembl: ENSG00000140612.14HGNC: HGNC:17718UniProt: H0YKT4
79PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Protease
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
serine-type endopeptidase activityprotein bindingprotein processingprotein maturationdengue diseaseneurodegenerative diseasehypertrophic cardiomyopathyacute tonsillitis
✦AI Summary

SEC11A encodes SPC18, the catalytic subunit of the signal peptidase complex (SPC), a membrane protein complex in the endoplasmic reticulum that catalyzes removal of N-terminal signal sequences from nascent secretory proteins 1. The active site forms a catalytic triad positioned at the ER membrane, with a transmembrane window that generates specificity for signal peptides containing hydrophobic segments shorter than 18-20 amino acids 1. Beyond its canonical role in protein processing, SEC11A expression is significantly elevated in multiple malignancies. In bladder cancer, SPC18 upregulation (54% of cases) correlates with basal-like phenotype and predicts poor survival, with knockdown inhibiting cell growth and invasiveness 2. High SEC11A expression independently associates with poor prognosis in gastric cancer (5-year survival 52.3% vs 75.9%, p<0.005) 3 and head and neck squamous cell carcinoma, where it correlates with gene amplification and altered immune infiltration patterns 4. In tongue squamous cell carcinoma, SEC11A promotes proliferation and invasion via EGFR pathway activation, and is suppressed by miR-873-5p 5. SEC11A has also emerged as a neoantigen target in colorectal cancer immunotherapy 6. Additionally, dysregulation of SEC11A appears relevant in intervertebral disc degeneration 7 and parathyroid adenoma 8, suggesting broader pathogenic roles beyond protein secretion.

Sources cited
1
SEC11A catalyzes cleavage of N-terminal signal peptides with hydrophobic alpha-helices shorter than 18-20 amino acids; atomic structure reveals active site architecture and specificity determinants
PMID: 34388369
2
SPC18 (SEC11A product) is upregulated in 54% of bladder cancers, correlates with basal-like phenotype, and knockdown/overexpression modulates cell growth and invasiveness
PMID: 31163419
3
High SEC11A expression in gastric cancer independently predicts poor survival (5-year: 52.3% vs 75.9%) and associates with aggressive clinicopathological features
PMID: 36456166
4
SEC11A is targeted by miR-873-5p in tongue squamous cell carcinoma; overexpression promotes cell proliferation and invasion via EGFR pathway
PMID: 33675129
5
SEC11A upregulation from gene amplification independently predicts poor progression-free and disease-specific survival in head and neck squamous cell carcinoma; correlates with immunosuppressive microenvironment
PMID: 35653344
6
SEC11A-R11L identified as immunogenic neoantigen in colorectal cancer capable of eliciting specific CTL responses
PMID: 33689574
7
SEC11A is a target of miR-508-5p and upregulated in intervertebral disc degeneration
PMID: 37091041
8
SEC11A identified as differentially expressed gene in parathyroid adenomas compared to normal tissue
PMID: 35953114
Disease Associationsⓘ20
dengue diseaseOpen Targets
0.46Moderate
neurodegenerative diseaseOpen Targets
0.44Moderate
hypertrophic cardiomyopathyOpen Targets
0.18Weak
acute tonsillitisOpen Targets
0.12Weak
temporomandibular joint disorderOpen Targets
0.11Weak
open-angle glaucomaOpen Targets
0.10Suggestive
neoplasmOpen Targets
0.09Suggestive
bipolar disorderOpen Targets
0.08Suggestive
corneal ulcerOpen Targets
0.08Suggestive
colorectal carcinomaOpen Targets
0.08Suggestive
gastric cancerOpen Targets
0.04Suggestive
head and neck squamous cell carcinomaOpen Targets
0.04Suggestive
breast cancerOpen Targets
0.03Suggestive
schizophreniaOpen Targets
0.02Suggestive
esophageal squamous cell carcinomaOpen Targets
0.02Suggestive
Abnormality of the skeletal systemOpen Targets
0.02Suggestive
thyroid diseaseOpen Targets
0.02Suggestive
dilated cardiomyopathyOpen Targets
0.02Suggestive
colorectal cancerOpen Targets
0.02Suggestive
adenomaOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
SPCS1Protein interaction100%RPS25Protein interaction84%SEC61GProtein interaction81%SEC11CProtein interaction80%SPCS2Protein interaction77%SPCS3Protein interaction77%
Tissue Expression6 tissues
Ovary
100%
Lung
96%
Bone Marrow
85%
Liver
78%
Heart
71%
Brain
71%
Gene Interaction Network
Click a node to explore
SEC11ASPCS1RPS25SEC61GSEC11CSPCS2SPCS3
PROTEIN STRUCTURE
Preparing viewer…
PDB7P2P · 4.90 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.94LoF Tolerant
pLIⓘ
0.09Tolerant
Observed/Expected LoF0.50 [0.28–0.94]
RankingsWhere SEC11A stands among ~20K protein-coding genes
  • #6,028of 20,598
    Most Researched79
  • #8,670of 17,882
    Most Constrained (LOEUF)0.94
Genes detectedSEC11A
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Structure of the human signal peptidase complex reveals the determinants for signal peptide cleavage.
PMID: 34388369
Mol Cell · 2021
1.00
2
SEC11A Expression Is Associated with Basal-Like Bladder Cancer and Predicts Patient Survival.
PMID: 31163419
Pathobiology · 2019
0.90
3
Clinical Significance of
PMID: 36456166
Anticancer Res · 2022
0.80
4
Neoantigen-reactive T cells exhibit effective anti-tumor activity against colorectal cancer.
PMID: 33689574
Hum Vaccin Immunother · 2022
0.70
5
MiR-873-5p modulates progression of tongue squamous cell carcinoma via targeting SEC11A.
PMID: 33675129
Oral Dis · 2022
0.60