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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SPCS1
signal peptidase complex subunit 1
Chromosome 3 · 3p21.1
NCBI Gene: 28972Ensembl: ENSG00000114902.14HGNC: HGNC:23401UniProt: A0A5F9YFS9
43PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingendoplasmic reticulum membraneprotein processingvirion assemblydengue diseaseosteoarthritiscataractosteoarthritis, hip
✦AI Summary

SPCS1 (signal peptidase complex subunit 1) is a critical component of the endoplasmic reticulum signal peptidase complex that plays essential roles in viral protein processing and disease pathogenesis. The protein is required for post-translational processing of structural proteins in multiple flaviviruses, including West Nile, Dengue, Zika, Yellow Fever, Japanese encephalitis, and hepatitis C viruses 1. SPCS1 specifically facilitates cleavage of flaviviral structural proteins prM and E, which is necessary for proper virion assembly and secretion 1. In Japanese encephalitis virus, SPCS1 interacts with nonstructural protein NS2B through transmembrane domains, regulating viral assembly without affecting cell entry, RNA replication, or translation 2. For hepatitis C virus, SPCS1 facilitates E2-p7 processing by the signal peptidase complex, which is crucial for viral assembly efficiency 3. Beyond viral infections, SPCS1 has been implicated in multiple diseases. It serves as a predictive biomarker for Alzheimer's disease with depression 4, shows differential expression in Alzheimer's disease brain tissue 5, and is subject to cis-acting regulatory polymorphisms associated with osteoarthritis susceptibility 6. The protein's preferential processing of specific protein cargo makes it a potential therapeutic target for flavivirus infections 1.

Sources cited
1
SPCS1 is required for flavivirus structural protein processing and virion assembly
PMID: 27383988
2
SPCS1 interacts with JEV NS2B protein through transmembrane domains to regulate viral assembly
PMID: 29593046
3
SPCS1 facilitates HCV E2-p7 processing by signal peptidase complex for viral assembly
PMID: 35130329
4
SPCS1 serves as a predictive biomarker for Alzheimer's disease with depression
PMID: 40074694
5
SPCS1 shows differential expression in Alzheimer's disease brain tissue
PMID: 30909231
6
SPCS1 is subject to cis-acting regulatory polymorphisms associated with osteoarthritis
PMID: 24886551
Disease Associationsⓘ20
dengue diseaseOpen Targets
0.46Moderate
osteoarthritisOpen Targets
0.25Weak
cataractOpen Targets
0.14Weak
osteoarthritis, hipOpen Targets
0.07Suggestive
bipolar disorderOpen Targets
0.06Suggestive
hypertensionOpen Targets
0.06Suggestive
schizophreniaOpen Targets
0.06Suggestive
osteoarthritis, kneeOpen Targets
0.06Suggestive
Inguinal herniaOpen Targets
0.05Suggestive
JaundiceOpen Targets
0.05Suggestive
nephrolithiasisOpen Targets
0.05Suggestive
ureterolithiasisOpen Targets
0.05Suggestive
bipolar I disorderOpen Targets
0.05Suggestive
ulcerative colitisOpen Targets
0.05Suggestive
Abnormality of the skeletal systemOpen Targets
0.04Suggestive
Alzheimer diseaseOpen Targets
0.04Suggestive
type 2 diabetes mellitusOpen Targets
0.03Suggestive
smoking behaviorOpen Targets
0.03Suggestive
mood disorderOpen Targets
0.03Suggestive
medical procedureOpen Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
SEC61GProtein interaction100%SEC11AProtein interaction100%SRP19Protein interaction83%TMEM258Protein interaction79%DAD1Protein interaction79%SSR2Protein interaction79%
Tissue Expression6 tissues
Brain
100%
Liver
94%
Heart
59%
Lung
58%
Ovary
55%
Bone Marrow
49%
Gene Interaction Network
Click a node to explore
SPCS1SEC61GSEC11ASRP19TMEM258DAD1SSR2
PROTEIN STRUCTURE
Preparing viewer…
PDB7P2P · 4.90 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.99LoF Tolerant
pLIⓘ
0.01Tolerant
Observed/Expected LoF0.58 [0.36–0.99]
RankingsWhere SPCS1 stands among ~20K protein-coding genes
  • #9,790of 20,598
    Most Researched43
  • #9,525of 17,882
    Most Constrained (LOEUF)0.99
Genes detectedSPCS1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
A CRISPR screen defines a signal peptide processing pathway required by flaviviruses.
PMID: 27383988
Nature · 2016
1.00
2
Decoding Alzheimer's Disease With Depression: Molecular Insights and Therapeutic Target.
PMID: 40074694
J Cell Mol Med · 2025
0.90
3
Trichomonas vaginalis adhesion protein 65 facilitates human papillomavirus entry via SPCS1-mediated upregulation of CD151 and HSPG2 in keratinocyte lineage.
PMID: 41199321
Infect Dis Poverty · 2025
0.80
4
A Meta-Analysis of Alzheimer's Disease Brain Transcriptomic Data.
PMID: 30909231
J Alzheimers Dis · 2019
0.70
5
Host Factor SPCS1 Regulates the Replication of Japanese Encephalitis Virus through Interactions with Transmembrane Domains of NS2B.
PMID: 29593046
J Virol · 2018
0.60