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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SEMA3C
semaphorin 3C
Chromosome 7 · 7q21.11
NCBI Gene: 10512Ensembl: ENSG00000075223.15HGNC: HGNC:10725UniProt: Q99985
82PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
extracellular exosomeprotein bindingneuropilin bindingchemorepellent activityatrial fibrillationcoronary artery diseaseglaucomaneurodegenerative disease
✦AI Summary

SEMA3C (semaphorin 3C) is a secreted signaling protein that functions as a key regulator of cellular migration and tissue remodeling across multiple pathological contexts. The protein binds to neuropilin receptors (NRP1 and NRP2) to activate downstream signaling pathways including AKT/Gli1/c-Myc and MAPK cascades 12. In cancer, SEMA3C promotes tumor progression through multiple mechanisms: it enhances hepatocellular carcinoma stemness and stromal remodeling via NRP1/ITGB1 signaling 1, facilitates colorectal cancer liver metastasis through NRP2-mediated MAPK activation 2, and drives esophageal adenocarcinoma progression when regulated by SOX4 3. SEMA3C also modulates immune cell function, regulating tumor-associated macrophage polarization through VNN1 to influence lung cancer invasion 4. In fibrotic diseases, SEMA3C exacerbates liver fibrosis by promoting hepatic stellate cell activation through NRP2 signaling 5 and contributes to diabetic kidney disease progression by promoting endothelial-mesenchymal transition 6. Additionally, SEMA3C increases vascular permeability and promotes acute kidney injury, making its genetic inactivation protective 7. A novel circRNA-encoded SEMA3C protein (319aa) triggers ferroptosis in gastric cancer through glutathione metabolism disruption 8.

Sources cited
1
SEMA3C binds NRP1/ITGB1 receptors and activates AKT/Gli1/c-Myc signaling to promote HCC stemness and stromal remodeling
PMID: 38956074
2
CAF-secreted SEMA3C binds NRP2 receptor and activates MAPK pathway to facilitate colorectal cancer liver metastasis
PMID: 40402249
3
Mesangial cell-derived SEMA3C promotes endothelial-mesenchymal transition through NRP1/NRP2 in diabetic kidney disease
PMID: 37460555
4
SEMA3C exacerbates liver fibrosis through NRP2 signaling and hepatic stellate cell activation
PMID: 37055018
5
SEMA3C promotes vascular permeability and acute kidney injury; genetic inactivation is protective
PMID: 35090878
6
SEMA3C regulates tumor-associated macrophage polarization through VNN1 to influence lung cancer migration
PMID: 40901786
7
SOX4-regulated SEMA3C promotes esophageal adenocarcinoma progression and epithelial-mesenchymal transition
PMID: 40876500
8
CircRNA-encoded SEMA3C-319aa protein triggers ferroptosis through glutathione metabolism disruption in gastric cancer
PMID: 40954198
Disease Associationsⓘ20
atrial fibrillationOpen Targets
0.51Moderate
coronary artery diseaseOpen Targets
0.45Moderate
glaucomaOpen Targets
0.45Moderate
neurodegenerative diseaseOpen Targets
0.45Moderate
open-angle glaucomaOpen Targets
0.43Moderate
ovarian dysfunctionOpen Targets
0.38Weak
inborn disorder of amino acid metabolismOpen Targets
0.31Weak
subarachnoid hemorrhageOpen Targets
0.29Weak
posterior cortical atrophyOpen Targets
0.29Weak
atrial heart septal defectOpen Targets
0.29Weak
Alzheimer diseaseOpen Targets
0.28Weak
disorder of earOpen Targets
0.27Weak
ovarian neoplasmOpen Targets
0.27Weak
alopecia areataOpen Targets
0.26Weak
glomerulonephritisOpen Targets
0.26Weak
shoulder fractureOpen Targets
0.25Weak
clavicle fractureOpen Targets
0.24Weak
nephritisOpen Targets
0.21Weak
bronchial diseaseOpen Targets
0.19Weak
placenta praeviaOpen Targets
0.19Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
NRP1Protein interaction100%PLXND1Protein interaction99%PLXNA1Protein interaction97%PLXNA3Protein interaction89%GATA6Protein interaction83%PLXNA4Protein interaction80%
Tissue Expression6 tissues
Heart
100%
Ovary
81%
Lung
38%
Brain
29%
Bone Marrow
5%
Liver
1%
Gene Interaction Network
Click a node to explore
SEMA3CNRP1PLXND1PLXNA1PLXNA3GATA6PLXNA4
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q99985
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.74LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.55 [0.41–0.74]
RankingsWhere SEMA3C stands among ~20K protein-coding genes
  • #5,822of 20,598
    Most Researched82
  • #5,784of 17,882
    Most Constrained (LOEUF)0.74
Genes detectedSEMA3C
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Semaphorin 3C (Sema3C) reshapes stromal microenvironment to promote hepatocellular carcinoma progression.
PMID: 38956074
Signal Transduct Target Ther · 2024
1.00
2
Cancer-associated fibroblast-derived SEMA3C facilitates colorectal cancer liver metastasis via NRP2-mediated MAPK activation.
PMID: 40402249
Proc Natl Acad Sci U S A · 2025
0.90
3
Single-cell transcriptomic profiles in the pathophysiology within the microenvironment of early diabetic kidney disease.
PMID: 37460555
Cell Death Dis · 2023
0.80
4
Semaphorin 3C exacerbates liver fibrosis.
PMID: 37055018
Hepatology · 2023
0.70
5
The novel protein SEMA3C-319aa triggers glutathione metabolism-dependent ferroptosis in gastric cancer.
PMID: 40954198
Oncogene · 2025
0.60