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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SINHCAF
SIN3-HDAC complex associated factor
Chromosome 12 · 12p11.21
NCBI Gene: 58516Ensembl: ENSG00000139146.15HGNC: HGNC:30702UniProt: Q9NP50
53PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
negative regulation of cell migrationprotein bindingSin3-type complexnegative regulation of cell differentiation
✦AI Summary

SINHCAF (SIN3-HDAC complex associated factor), also known as FAM60A, is a core subunit of the Sin3/HDAC chr12-remodeling complex with multifaceted roles in cell cycle regulation and transcriptional repression. In embryonic stem cells, SINHCAF stabilizes SIN3A on chr12 and maintains rapid proliferation with shortened G1-phase, preventing premature differentiation 1. The protein specifically represses HIF-2α expression through interaction with transcription factor SP1 and HDAC1 recruitment to target promoters, regulating hypoxia-responsive cellular functions including angiogenesis and viability 2. Clinically, SINHCAF is frequently amplified and overexpressed in malignant germ cell tumors (GCTs), where it promotes anchorage-dependent proliferation, tumorigenesis, and cell migration while suppressing differentiation-associated gene expression 1. SINHCAF overexpression also promotes osteosarcoma and cisplatin-resistant lung cancer development, with knockdown inhibiting proliferation and cell cycle progression 34. In esophageal adenocarcinoma, elevated SINHCAF predicts poor survival outcomes 5. A genetic variant in FAM60A (rs147538848) associates with type 2 diabetes susceptibility 6. Given its role in HDAC complex function, histone deacetylase inhibitors represent a promising therapeutic approach for SINHCAF-driven malignancies, particularly GCTs 7.

Sources cited
1
SINHCAF is amplified in malignant GCTs, promotes cell proliferation and tumorigenesis, and its silencing inhibits proliferation, migration, and invasion; HDAC inhibitors are potential therapeutic agents
PMID: 36056608
2
SINHCAF specifically represses HIF-2α expression through SP1 interaction and HDAC1 recruitment, regulating angiogenesis and cell viability
PMID: 29784889
3
SINHCAF is part of a 5-gene prognostic signature for esophageal adenocarcinoma, with elevated expression associated with poor survival
PMID: 33832101
4
SINHCAF is a potential oncogene in testicular GCTs on 12p, supporting HDAC inhibitor efficacy for treatment
PMID: 36426822
5
FAM60A is upregulated in osteosarcoma and promotes cell proliferation, inhibits apoptosis, and regulates cell cycle progression
PMID: 37439040
6
FAM60A promotes cisplatin resistance in lung cancer by activating SKP2 expression and inhibiting apoptosis
PMID: 32796403
7
FAM60A variant rs147538848 associates with type 2 diabetes susceptibility in genome-wide association studies
PMID: 26818947
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
MORF4L1Protein interaction97%BAHCC1Protein interaction97%SIN3BProtein interaction95%PHF12Protein interaction95%ARID4AProtein interaction85%SAP30Protein interaction85%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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SINHCAFMORF4L1BAHCC1SIN3BPHF12ARID4ASAP30
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q9NP50
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.41Moderately Constrained
pLIⓘ
0.99Intolerant
Observed/Expected LoF0.16 [0.07–0.41]
RankingsWhere SINHCAF stands among ~20K protein-coding genes
  • #8,492of 20,598
    Most Researched53
  • #2,158of 17,882
    Most Constrained (LOEUF)0.41 · top quartile
Genes detectedSINHCAF
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
SIN3-HDAC complex-associated factor, a chromatin remodelling gene located in the 12p amplicon, is a potential germ cell tumour-specific oncogene.
PMID: 36056608
J Pathol · 2022
1.00
2
SINHCAF/FAM60A and SIN3A specifically repress HIF-2α expression.
PMID: 29784889
Biochem J · 2018
0.90
3
A five-gene signature for predicting overall survival of esophagus adenocarcinoma.
PMID: 33832101
Medicine (Baltimore) · 2021
0.80
4
Targeting histone deacetylases in testicular germ cell tumours: an encouraging treatment approach for the future
PMID: 36426822
J Pathol · 2023
0.70
5
FAM60A promotes osteosarcoma development and progression.
PMID: 37439040
Cancer Med · 2023
0.60