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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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SLC25A12
solute carrier family 25 member 12
Chromosome 2 Β· 2q31.1
NCBI Gene: 8604Ensembl: ENSG00000115840.15HGNC: HGNC:10982UniProt: O75746
143PubMed Papers
1Diseases
0Drugs
22Pathogenic Variants
FUNCTIONAL ROLE
Transporter
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
3-sulfino-L-alanine: proton, glutamate antiporter activityaspartate:glutamate, proton antiporter activitycalcium ion bindingprotein bindingDevelopmental and epileptic encephalopathy 39 with leukodystrophy
✦AI Summary

SLC25A12 encodes a mitochondrial electrogenic aspartate/glutamate antiporter that mediates the malate-aspartate shuttle, promoting aspartate efflux while facilitating glutamate and proton entry into mitochondria 1234. The transporter also exchanges L-cysteinesulfinate with glutamate or aspartate, supporting amino acid metabolism 1. SLC25A12 lacks transport activity for glutamine or GABA 4, though related mitochondrial activity can indirectly affect GABA sequestration through Aralar-mediated mechanisms 5. Disease relevance: SLC25A12 variants are associated with autism spectrum disorder (ASD) risk; meta-analyses show rs2056202 and rs2292813 polymorphisms significantly reduce ASD susceptibility 67. Additionally, SLC25A12 mutations cause developmental and epileptic encephalopathy 39 with leukodystrophy 8. Clinical significance: Genetic variants in SLC25A12 represent identifiable molecular markers for ASD risk stratification 9, and pathogenic mutations warrant screening in pediatric neurological disorders 10. The gene's critical role in mitochondrial bioenergetics and ATP synthesis links SLC25A12 dysfunction to broader neurological dysfunction.

Sources cited
1
SLC25A12 mediates aspartate/glutamate antiport and L-cysteinesulfinate exchange with glutamate or aspartate
PMID: 11566871
2
SLC25A12 functions in malate-aspartate shuttle
PMID: 19641205
3
SLC25A12 functions in malate-aspartate shuttle
PMID: 24515575
4
SLC25A12 mediates electrogenic aspartate/glutamate antiport and lacks transport activity for glutamine or GABA
PMID: 38945283
5
Aralar-mediated mitochondrial regulation affects GABA sequestration and social behavior
PMID: 32200800
6
SLC25A12 variants rs2056202 and rs2292813 are significantly associated with decreased ASD risk
PMID: 25921325
7
SLC25A12 SNPs rs2056202 and rs2292813 show linkage and association with autism
PMID: 15056512
8
SLC25A12 mutations identified in mitochondrial disorder patients
PMID: 27290639
9
SLC25A12 variants associated with neurological disorders including ASD and epilepsy
PMID: 34797406
10
SLC25A12 variants among identified ASD risk genes
PMID: 35705542
Disease Associationsβ“˜1
Developmental and epileptic encephalopathy 39 with leukodystrophyUniProt
Pathogenic Variants22
NM_003705.5(SLC25A12):c.57_58del (p.Phe20fs)Pathogenic
not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 20
NM_003705.5(SLC25A12):c.1468C>T (p.Arg490Ter)Pathogenic
not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 490
NM_003705.5(SLC25A12):c.16C>T (p.Gln6Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 6
NM_003705.5(SLC25A12):c.1747C>T (p.Arg583Ter)Likely pathogenic
Developmental and epileptic encephalopathy, 39
β˜…β˜†β˜†β˜†2025β†’ Residue 583
NM_003705.5(SLC25A12):c.693del (p.Val232fs)Pathogenic
Developmental and epileptic encephalopathy, 39
β˜…β˜†β˜†β˜†2024β†’ Residue 232
NM_003705.5(SLC25A12):c.13-1_13delLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2023
GRCh38/hg38 2q31.1(chr2:171833866-171844606)x0Pathogenic
Developmental and epileptic encephalopathy, 39
β˜…β˜†β˜†β˜†2023
NM_003705.5(SLC25A12):c.28C>T (p.Arg10Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 10
NM_003705.5(SLC25A12):c.1029dup (p.Val344fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 344
NM_003705.5(SLC25A12):c.1304_1305+2delLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2022
NM_003705.5(SLC25A12):c.1057C>T (p.Arg353Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2022β†’ Residue 353
NM_003705.5(SLC25A12):c.249_255del (p.Cys85fs)Pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2022β†’ Residue 85
NM_003705.5(SLC25A12):c.881dup (p.Leu295fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2022β†’ Residue 295
NM_003705.5(SLC25A12):c.1224+1_1224+2delLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2022
NM_003705.5(SLC25A12):c.845+1delPathogenic
not provided
β˜…β˜†β˜†β˜†2021
NM_003705.5(SLC25A12):c.326-2A>CLikely pathogenic
Developmental and epileptic encephalopathy, 39
β˜…β˜†β˜†β˜†2019
NM_003705.5(SLC25A12):c.225del (p.Glu76fs)Likely pathogenic
Developmental and epileptic encephalopathy, 39
β˜…β˜†β˜†β˜†2019β†’ Residue 76
NM_003705.5(SLC25A12):c.1618G>A (p.Asp540Asn)Likely pathogenic
Developmental and epileptic encephalopathy, 39
β˜…β˜†β˜†β˜†2017β†’ Residue 540
NM_003705.5(SLC25A12):c.1447-2_1447-1delPathogenic
Developmental and epileptic encephalopathy, 39
β˜†β˜†β˜†β˜†2022
NM_003705.5(SLC25A12):c.1295C>T (p.Ala432Val)Pathogenic
Developmental and epileptic encephalopathy, 39
β˜†β˜†β˜†β˜†2022β†’ Residue 432
View on ClinVar β†—
Related Genes
TIMM9Protein interaction100%TIMM23Protein interaction99%TIMM8AProtein interaction97%TIMM13Protein interaction97%SLC25A13Protein interaction84%MTCH1Protein interaction70%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
Click a node to explore
SLC25A12TIMM9TIMM23TIMM8ATIMM13SLC25A13MTCH1
PROTEIN STRUCTURE
Preparing viewer…
PDB4P5X Β· 2.26 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.53Moderately Constrained
pLIβ“˜
0.88Intermediate
Observed/Expected LoF0.37 [0.27–0.53]
RankingsWhere SLC25A12 stands among ~20K protein-coding genes
  • #3,208of 20,598
    Most Researched143 Β· top quartile
  • #2,095of 5,498
    Most Pathogenic Variants22
  • #3,263of 17,882
    Most Constrained (LOEUF)0.53 Β· top quartile
Genes detectedSLC25A12
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Genetics of autism spectrum disorder: an umbrella review of systematic reviews and meta-analyses.
PMID: 35705542
Transl Psychiatry Β· 2022
1.00
2
New perspective in diagnostics of mitochondrial disorders: two years' experience with whole-exome sequencing at a national paediatric centre.
PMID: 27290639
J Transl Med Β· 2016
0.90
3
A novel diabetic foot ulcer diagnostic model: identification and analysis of genes related to glutamine metabolism and immune infiltration.
PMID: 38287255
BMC Genomics Β· 2024
0.80
4
Association between genetic variants in SLC25A12 and risk of autism spectrum disorders: An integrated meta-analysis.
PMID: 25921325
Am J Med Genet B Neuropsychiatr Genet Β· 2015
0.70
5
Aralar Sequesters GABA into Hyperactive Mitochondria, Causing Social Behavior Deficits.
PMID: 32200800
Cell Β· 2020
0.60