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GeneE
25 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
SLC25A13
solute carrier family 25 member 13
Chromosome 7 Β· 7q21.3
NCBI Gene: 10165Ensembl: ENSG00000004864.15HGNC: HGNC:10983UniProt: Q9UJS0
287PubMed Papers
22Diseases
0Drugs
213Pathogenic Variants
FUNCTIONAL ROLE
Transporter
RESEARCH IMPACT
TrendingVariant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
3-sulfino-L-alanine: proton, glutamate antiporter activityaspartate:glutamate, proton antiporter activitycalcium ion bindingprotein bindingneonatal intrahepatic cholestasis due to citrin deficiencycitrullinemia type IIcitrin deficiencycitrullinemia
✦AI Summary

SLC25A13 encodes citrin, a mitochondrial electrogenic aspartate/glutamate antiporter that mediates the malate-aspartate shuttle, a critical NADH-shuttle pathway in hepatocytes 1. The transporter catalyzes consecutive, stepwise substrate exchange, promoting aspartate efflux while facilitating glutamate and proton entry into mitochondria 2. SLC25A13 also transports L-cysteinesulfinate in exchange for glutamate and proton, or aspartate without proton translocation 3. Notably, it lacks transport activity for gamma-aminobutyric acid 4. Purinosome assembly occurs proximally to SLC25A13 at the mitochondrial membrane, enabling uptake of glycine, aspartate, and glutamate essential for purine synthesis 5. Biallelic SLC25A13 mutations cause citrin deficiency (CD), a recessive liver disease with age-dependent phenotypes 6. CD impairs hepatic metabolic pathways including glycolysis, gluconeogenesis, lipogenesis, and the urea cycle, resulting in energy deficit in hepatocytes 6. Neonatal intrahepatic cholestasis caused by citrin deficiency (NICCD) represents the major pediatric phenotype 7. SLC25A13 mutations demonstrate significant geographic distribution variation, with northern Chinese populations showing greater allelic heterogeneity 7. Current management includes dietary intervention with medium-chain triglycerides as first-line treatment, with liver transplantation remaining the sole curative option for severe cases 6.

Sources cited
1
SLC25A13 mediates consecutive, stepwise substrate exchange in the malate-aspartate shuttle
PMID: 38937634
2
SLC25A13 transports L-cysteinesulfinate in exchange for glutamate and proton, or aspartate without proton translocation
PMID: 11566871
3
SLC25A13 lacks transport activity towards gamma-aminobutyric acid (GABA)
PMID: 38945283
4
Purinosomes spatially co-localize with SLC25A13 at the mitochondrial membrane for substrate uptake
PMID: 39098527
5
SLC25A13 encodes citrin, the liver-type aspartate-glutamate carrier isoform 2, essential for the NADH-shuttle pathway
PMID: 30708027
6
Biallelic SLC25A13 mutations cause citrin deficiency, affecting malate-aspartate shuttle, glycolysis, gluconeogenesis, lipogenesis, and urea cycles
PMID: 39021261
7
SLC25A13 mutations demonstrate geographic distribution variation, with northern populations showing greater allelic heterogeneity
PMID: 27405544
8
Medium-chain triglycerides and liver transplantation are primary treatments for citrin deficiency
PMID: 39021261
Disease Associationsβ“˜22
neonatal intrahepatic cholestasis due to citrin deficiencyOpen Targets
0.81Strong
citrullinemia type IIOpen Targets
0.76Strong
citrin deficiencyOpen Targets
0.65Moderate
citrullinemiaOpen Targets
0.62Moderate
adult-onset citrullinemia type IOpen Targets
0.50Moderate
osteoarthritisOpen Targets
0.44Moderate
osteoarthritis, kneeOpen Targets
0.43Moderate
citrullinemia type IOpen Targets
0.41Moderate
Chronic painOpen Targets
0.37Weak
PainOpen Targets
0.37Weak
musculoskeletal system diseaseOpen Targets
0.36Weak
Low back painOpen Targets
0.35Weak
genetic disorderOpen Targets
0.34Weak
osteoporosisOpen Targets
0.33Weak
familial glucocorticoid deficiencyOpen Targets
0.32Weak
diverticular diseaseOpen Targets
0.31Weak
osteoarthritis, hipOpen Targets
0.31Weak
vertebral disorderOpen Targets
0.29Weak
neurodegenerative diseaseOpen Targets
0.29Weak
vertebral joint diseaseOpen Targets
0.29Weak
Citrin deficiency, adolescent or adult onsetUniProt
Citrin deficiency, neonatal or infantile onsetUniProt
Pathogenic Variants213
NM_014251.3(SLC25A13):c.852_855del (p.Met285fs)Pathogenic
Neonatal intrahepatic cholestasis due to citrin deficiency|Citrullinemia type II|Citrin deficiency|not provided|Citrullinemia, type II, adult-onset|Neonatal intrahepatic cholestasis due to citrin deficiency;Citrullinemia, type II, adult-onset|SLC25A13-related disorder|CITRIN DEFICIENCY, NEONATAL ONSET|Malignant lymphoma, large B-cell, diffuse|Citrullinemia
β˜…β˜…β˜†β˜†2026β†’ Residue 285
NM_014251.3(SLC25A13):c.1677C>G (p.Tyr559Ter)Pathogenic
Citrin deficiency|Citrullinemia, type II, adult-onset|Citrullinemia
β˜…β˜…β˜†β˜†2026β†’ Residue 559
NM_014251.3(SLC25A13):c.1063C>T (p.Arg355Ter)Pathogenic
not provided|Citrin deficiency|Citrullinemia|Citrullinemia, type II, adult-onset|Citrullinemia, type II, adult-onset;Neonatal intrahepatic cholestasis due to citrin deficiency
β˜…β˜…β˜†β˜†2026β†’ Residue 355
NM_014251.3(SLC25A13):c.127C>T (p.Arg43Ter)Pathogenic
Citrin deficiency|not provided|Neonatal intrahepatic cholestasis due to citrin deficiency;Citrullinemia, type II, adult-onset|Citrullinemia, type II, adult-onset|SLC25A13-related disorder|Citrullinemia
β˜…β˜…β˜†β˜†2026β†’ Residue 43
NM_014251.3(SLC25A13):c.1178-1G>CLikely pathogenic
Citrin deficiency|Citrullinemia, type II, adult-onset;Neonatal intrahepatic cholestasis due to citrin deficiency|Citrullinemia
β˜…β˜…β˜†β˜†2026
NM_014251.3(SLC25A13):c.550C>T (p.Arg184Ter)Pathogenic
Neonatal intrahepatic cholestasis due to citrin deficiency|Citrin deficiency|not provided|Citrullinemia|Citrullinemia, type II, adult-onset;Neonatal intrahepatic cholestasis due to citrin deficiency|Citrullinemia, type II, adult-onset
β˜…β˜…β˜†β˜†2026β†’ Residue 184
NM_014251.3(SLC25A13):c.615+5G>APathogenic
Neonatal intrahepatic cholestasis due to citrin deficiency|Citrin deficiency|Citrullinemia type II|not provided|Citrullinemia, type II, adult-onset|Citrullinemia, type II, adult-onset;Neonatal intrahepatic cholestasis due to citrin deficiency|SLC25A13-related disorder|Citrullinemia
β˜…β˜…β˜†β˜†2026
NM_014251.3(SLC25A13):c.1231G>A (p.Val411Met)Pathogenic
Neonatal intrahepatic cholestasis due to citrin deficiency|Citrin deficiency|Citrullinemia, type II, adult-onset|Citrullinemia type II|Citrullinemia
β˜…β˜…β˜†β˜†2026β†’ Residue 411
NM_014251.3(SLC25A13):c.1610_1612delinsAT (p.Leu537fs)Pathogenic
Citrullinemia, type II, adult-onset|Neonatal intrahepatic cholestasis due to citrin deficiency;Citrullinemia, type II, adult-onset|Citrin deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 537
NM_014251.3(SLC25A13):c.577dup (p.His193fs)Pathogenic
Citrullinemia, type II, adult-onset|Citrin deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 193
NM_014251.3(SLC25A13):c.229G>T (p.Glu77Ter)Pathogenic
Citrin deficiency|Citrullinemia, type II, adult-onset|Citrullinemia
β˜…β˜…β˜†β˜†2025β†’ Residue 77
NM_014251.3(SLC25A13):c.316G>T (p.Glu106Ter)Pathogenic
Citrin deficiency|Citrullinemia
β˜…β˜…β˜†β˜†2025β†’ Residue 106
NM_014251.3(SLC25A13):c.1813C>T (p.Arg605Ter)Pathogenic
Neonatal intrahepatic cholestasis due to citrin deficiency|not provided|Citrullinemia, type II, adult-onset;Neonatal intrahepatic cholestasis due to citrin deficiency|Citrin deficiency|Citrullinemia, type II, adult-onset|Citrullinemia type II|Citrullinemia
β˜…β˜…β˜†β˜†2025β†’ Residue 605
NM_014251.3(SLC25A13):c.1399C>T (p.Arg467Ter)Pathogenic
Citrin deficiency|not provided|Citrullinemia|Neonatal intrahepatic cholestasis due to citrin deficiency|Citrullinemia, type II, adult-onset
β˜…β˜…β˜†β˜†2025β†’ Residue 467
NM_014251.3(SLC25A13):c.1311+1G>APathogenic
Citrullinemia type II|Citrin deficiency|not provided|Citrullinemia, type II, adult-onset|Neonatal intrahepatic cholestasis due to citrin deficiency|Citrullinemia
β˜…β˜…β˜†β˜†2025
NM_014251.3(SLC25A13):c.848+3A>CPathogenic
Citrin deficiency|Neonatal intrahepatic cholestasis due to citrin deficiency|Citrullinemia, type II, adult-onset|Neonatal intrahepatic cholestasis due to citrin deficiency;Citrullinemia, type II, adult-onset|Citrullinemia type II|Citrullinemia
β˜…β˜…β˜†β˜†2025
NM_014251.3(SLC25A13):c.1173T>G (p.Tyr391Ter)Pathogenic
Citrin deficiency|Citrullinemia, type II, adult-onset|Citrullinemia
β˜…β˜…β˜†β˜†2025β†’ Residue 391
NM_014251.3(SLC25A13):c.1095del (p.Phe365fs)Pathogenic
Citrin deficiency|Citrullinemia type II|not provided|Citrullinemia, type II, adult-onset|Neonatal intrahepatic cholestasis due to citrin deficiency|Citrullinemia
β˜…β˜…β˜†β˜†2025β†’ Residue 365
NM_014251.3(SLC25A13):c.1231-1G>APathogenic
Citrin deficiency|Citrullinemia, type II, adult-onset|Citrullinemia
β˜…β˜…β˜†β˜†2025
NM_014251.3(SLC25A13):c.1622C>A (p.Ala541Asp)Pathogenic
Citrin deficiency|Citrullinemia type II|Citrullinemia
β˜…β˜…β˜†β˜†2025β†’ Residue 541
View on ClinVar β†—
Related Genes
TIMM9Protein interaction100%TIMM23Protein interaction99%TIMM8AProtein interaction96%TIMM13Protein interaction96%ASS1Protein interaction95%TIMM22Protein interaction86%
Tissue Expression6 tissues
Liver
100%
Bone Marrow
17%
Lung
13%
Ovary
12%
Brain
11%
Heart
10%
Gene Interaction Network
Click a node to explore
SLC25A13TIMM9TIMM23TIMM8ATIMM13ASS1TIMM22
PROTEIN STRUCTURE
Preparing viewer…
PDB4P5W Β· 2.40 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.94LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.77 [0.63–0.94]
RankingsWhere SLC25A13 stands among ~20K protein-coding genes
  • #1,254of 20,598
    Most Researched287 Β· top 10%
  • #307of 5,498
    Most Pathogenic Variants213 Β· top 10%
  • #8,702of 17,882
    Most Constrained (LOEUF)0.94
Genes detectedSLC25A13
Sources retrieved25 papers
Response timeβ€”
πŸ“„ Sources
25β–Ό
1
Molecular diagnosis of pediatric patients with citrin deficiency in China: SLC25A13 mutation spectrum and the geographic distribution.
PMID: 27405544
Sci Rep Β· 2016
1.00
2
Incidence and genetic variants of inborn errors of metabolism identified through newborn screening: A 7-year study in eastern coastal areas of China.
PMID: 36787440
Mol Genet Genomic Med Β· 2023
0.90
3
Bioinformatic and functional analysis of promoter region of human SLC25A13 gene.
PMID: 30708027
Gene Β· 2019
0.80
4
Purinosomes spatially co-localize with mitochondrial transporters.
PMID: 39098527
J Biol Chem Β· 2024
0.70
5
Citrin Deficiency: Clinical and Nutritional Features.
PMID: 37242166
Nutrients Β· 2023
0.64