HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
SLC28A3
solute carrier family 28 member 3
Chromosome 9 · 9q21.32-q21.33
NCBI Gene: 64078Ensembl: ENSG00000197506.8HGNC: HGNC:16484UniProt: Q9HAS3
58PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleoside transmembrane transportpyrimidine-containing compound transmembrane transportprotein bindinguridine transmembrane transporter activityretinal perforationretinal detachmentcorneal neovascularizationcerebral atherosclerosis
✦AI Summary

SLC28A3 encodes human concentrative nucleoside transporter 3 (hCNT3), a sodium-dependent transporter mediating uptake of both pyrimidine and purine nucleosides 12. The transporter operates via a 2:1 sodium/nucleoside symport mechanism and exhibits N3/cib transport characteristics, showing marked transport of thymidine and inosine 1. SLC28A3 transports endogenous nucleosides including uridine, adenosine, and cytidine, while also accepting clinically relevant nucleoside analogs such as gemcitabine, AZT, and ribavirin 134. A functionally relevant splice variant, hCNT3ins, localizes to the endoplasmic reticulum and participates in intracellular nucleoside salvage 5. Genetically, common coding variants in SLC28A3 are conserved in function 2, while intronic and synonymous variants (rs7853758, rs885004) associate with reduced anthracycline-induced cardiotoxicity in pediatric cancer patients 67. Mechanistically, SLC28A3 knockout protects cardiomyocytes against doxorubicin toxicity, and a novel cardioprotective variant (rs11140490) acts through regulation of antisense RNA SLC28A3-AS1 68. Clinical implications include pharmacogenomic testing recommendations for doxorubicin-treated children and potential therapeutic targeting through competitive inhibitors like desipramine 67. Additionally, SLC28A3 expression predicts fludarabine-cyclophosphamide response in chr9 lymphocytic leukemia and serves as a novel ductal cell marker in pancreatic islets 910.

Sources cited
1
SLC28A3 encodes human concentrative nucleoside transporter 3 (hCNT3), a sodium-dependent transporter mediating uptake of both pyrimidine and purine nucleosides , .
PMID: 11032837
2
A functionally relevant splice variant, hCNT3ins, localizes to the endoplasmic reticulum and participates in intracellular nucleoside salvage .
PMID: 18827020
3
SLC28A3 encodes human concentrative nucleoside transporter 3 (hCNT3), a sodium-dependent transporter mediating uptake of both pyrimidine and purine nucleosides , .
PMID: 15861042
⚠Limited data available — This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
retinal perforationOpen Targets
0.33Weak
retinal detachmentOpen Targets
0.33Weak
corneal neovascularizationOpen Targets
0.30Weak
cerebral atherosclerosisOpen Targets
0.29Weak
ocular hypotensionOpen Targets
0.23Weak
Alzheimer diseaseOpen Targets
0.19Weak
humerus fractureOpen Targets
0.18Weak
immune system diseaseOpen Targets
0.17Weak
risk-taking behaviourOpen Targets
0.11Weak
smoking behaviorOpen Targets
0.10Weak
smoking initiationOpen Targets
0.09Suggestive
neutropenia, severe congenital, 2, autosomal dominantOpen Targets
0.05Suggestive
X-linked severe congenital neutropeniaOpen Targets
0.04Suggestive
cervical carcinomaOpen Targets
0.04Suggestive
neutropenia, severe congenital, 10, autosomal recessiveOpen Targets
0.04Suggestive
neutropenia, severe congenital, 1, autosomal dominantOpen Targets
0.04Suggestive
breast carcinomaOpen Targets
0.03Suggestive
ulcerative colitisOpen Targets
0.03Suggestive
cardiomyopathyOpen Targets
0.02Suggestive
HypercholesterolemiaOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
SLC29A4Protein interaction70%SLC29A2Protein interaction64%SLC29A3Protein interaction58%SLC29A1Protein interaction58%SLC28A2Shared pathway54%SLC28A1Shared pathway50%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
3%
Liver
2%
Heart
1%
Brain
0%
Ovary
0%
Gene Interaction Network
Click a node to explore
SLC28A3SLC29A4SLC29A2SLC29A3SLC29A1SLC28A2SLC28A1
PROTEIN STRUCTURE
Preparing viewer…
PDB6KSW · 3.60 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.93LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.75 [0.61–0.93]
RankingsWhere SLC28A3 stands among ~20K protein-coding genes
  • #7,916of 20,598
    Most Researched58
  • #8,559of 17,882
    Most Constrained (LOEUF)0.93
Genes detectedSLC28A3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Functional Validation of Doxorubicin-Induced Cardiotoxicity-Related Genes.
PMID: 38510289
JACC CardioOncol · 2024
1.00
2
Identification of Drug Transporter Genomic Variants and Inhibitors That Protect Against Doxorubicin-Induced Cardiotoxicity.
PMID: 34874743
Circulation · 2022
0.90
3
Pharmacogenetics of Chemotherapy-Induced Cardiotoxicity.
PMID: 29713898
Curr Oncol Rep · 2018
0.80
4
Association of SLC28A3 Gene Expression and CYP2B6*6 Allele with the Response to Fludarabine Plus Cyclophosphamide in Chronic Lymphocytic Leukemia Patients.
PMID: 30778771
Pathol Oncol Res · 2020
0.70
5
Genome-wide association analysis on normal hearing function identifies PCDH20 and SLC28A3 as candidates for hearing function and loss.
PMID: 26188009
Hum Mol Genet · 2015
0.60