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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SLC39A1
solute carrier family 39 member 1
Chromosome 1 · 1q21.3
NCBI Gene: 27173Ensembl: ENSG00000143570.19HGNC: HGNC:12876UniProt: A0A0A0MTL8
54PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
plasma membraneprotein bindingzinc ion transmembrane transportzinc ion transmembrane transporter activityneurodegenerative diseasemathematical abilityneoplasmhepatocellular carcinoma
✦AI Summary

SLC39A1 is a zinc transporter mediating divalent cation (Zn2+) influx across the plasma membrane, functioning as the major importer of zinc from circulating blood into prostate cells 1. Beyond its canonical zinc transport function, SLC39A1 plays critical roles in disease pathogenesis. In hepatocellular carcinoma, SLC39A1 interacts with dynamin-related protein 1 (DRP1) to facilitate mitochondrial fission and impair mitochondrial quality control, promoting HCC recurrence and correlating with poor overall survival 2. Conversely, in early-stage HCC, decreased SLC39A1 expression predicts unfavorable prognosis and reduced relapse-free survival, suggesting context-dependent roles 3. In gastric cancer, elevated SLC39A1 independently predicts poor outcomes by promoting proliferation and invasion 4. Mechanistically, SLC39A1 participates in metabolic reprogramming and anti-apoptotic signaling through interactions with mitochondrial transporters 5. In bone homeostasis, the miR-133-SLC39A1 axis regulates osteogenic differentiation of mesenchymal stem cells, with SLC39A1 suppression contributing to estrogen-deficiency-induced osteoporosis 6. Additionally, SLC39A1 expression in blood tissues and exosomes associates with prostate cancer risk 7. These findings reveal SLC39A1 as a multifunctional protein with context-specific roles in cancer progression, bone metabolism, and immune responses.

Sources cited
1
SLC39A1 functions as the major zinc importer from blood plasma into prostate cells and mediates Zn2+ influx
PMID: 12888280
2
SLC39A1 interacts with DRP1 to facilitate mitochondrial fission and impair quality control, promoting HCC recurrence and correlating with poor survival
PMID: 40462487
3
Decreased SLC39A1 expression in early-stage HCC predicts unfavorable prognosis and reduced overall and relapse-free survival
PMID: 34615436
4
High SLC39A1 expression in gastric cancer independently predicts poor outcomes by promoting cell proliferation and invasion
PMID: 36407082
5
SLC39A1 participates in metabolic reprogramming and anti-apoptotic signaling through interaction with mitochondrial transporters
PMID: 40355755
6
miR-133 represses SLC39A1 expression, and SLC39A1 promotes osteogenic differentiation by increasing ALP activity and osteoblast-specific gene expression
PMID: 26013661
7
SLC39A1 expression in blood exosomes associates with prostate cancer risk
PMID: 39878408
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.30Weak
mathematical abilityOpen Targets
0.16Weak
neoplasmOpen Targets
0.10Weak
hepatocellular carcinomaOpen Targets
0.10Suggestive
gliomaOpen Targets
0.08Suggestive
prostate cancerOpen Targets
0.08Suggestive
cancerOpen Targets
0.06Suggestive
prostate carcinomaOpen Targets
0.06Suggestive
lung cancerOpen Targets
0.06Suggestive
renal cell carcinomaOpen Targets
0.05Suggestive
infectionOpen Targets
0.05Suggestive
gastric adenocarcinomaOpen Targets
0.05Suggestive
mucinous carcinomaOpen Targets
0.05Suggestive
pancreatic adenocarcinomaOpen Targets
0.04Suggestive
nonpapillary renal cell carcinomaOpen Targets
0.04Suggestive
headache disorderOpen Targets
0.04Suggestive
cervical squamous cell carcinomaOpen Targets
0.03Suggestive
schizophreniaOpen Targets
0.03Suggestive
gastric cancerOpen Targets
0.03Suggestive
vascular diseaseOpen Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
HFM1Protein interaction98%CYBRD1Protein interaction95%SLC30A5Protein interaction87%C1orf146Protein interaction86%SLC11A2Protein interaction83%SLC40A1Protein interaction83%
Tissue Expression6 tissues
Lung
100%
Liver
64%
Ovary
50%
Brain
27%
Heart
0%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
SLC39A1HFM1CYBRD1SLC30A5C1orf146SLC11A2SLC40A1
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q9NY26
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.21LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.81 [0.55–1.21]
RankingsWhere SLC39A1 stands among ~20K protein-coding genes
  • #8,374of 20,598
    Most Researched54
  • #12,768of 17,882
    Most Constrained (LOEUF)1.21
Genes detectedSLC39A1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Coordination of SLC39A1 and DRP1 facilitates HCC recurrence by impairing mitochondrial quality control.
PMID: 40462487
Clin Transl Med · 2025
1.00
2
The genetic interaction map of the human solute carrier superfamily.
PMID: 40355755
Mol Syst Biol · 2025
0.90
3
Upregulated Solute Carrier SLC39A1 Promotes Gastric Cancer Proliferation and Indicates Unfavorable Prognosis.
PMID: 36407082
Genet Res (Camb) · 2022
0.80
4
Decreased SLC39A1 (Solute carrier family 39 member 1) expression predicts unfavorable prognosis in patients with early-stage hepatocellular carcinoma.
PMID: 34615436
Bioengineered · 2021
0.70
5
MiR-133 is Involved in Estrogen Deficiency-Induced Osteoporosis through Modulating Osteogenic Differentiation of Mesenchymal Stem Cells.
PMID: 26013661
Med Sci Monit · 2015
0.60