HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
SLC47A1
solute carrier family 47 member 1
Chromosome 17 · 17p11.2
NCBI Gene: 55244Ensembl: ENSG00000142494.14HGNC: HGNC:25588UniProt: Q96FL8
66PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
putrescine transmembrane transporter activityxenobiotic detoxification by transmembrane export across the plasma membraneL-alpha-amino acid transmembrane transporttransmembrane transporter activityneurodegenerative diseasebrain aneurysmgoutkidney failure
✦AI Summary

SLC47A1 encodes multidrug and toxin extrusion protein 1 (MATE1), which functions as a H+/organic cation antiporter facilitating the efflux of endogenous metabolites, drugs, and toxins through kidney and liver into urine and bile 1. The protein plays a crucial role in metformin pharmacokinetics, with genetic variants affecting drug response in type 2 diabetes patients. Meta-analysis revealed that the SLC47A1 rs2289669 polymorphism is associated with improved glycemic response to metformin, with A allele carriers showing greater HbA1c reduction compared to GG genotype patients 2. However, individual studies have shown mixed results regarding the clinical significance of SLC47A1 variants on metformin efficacy and pharmacokinetics 34. Beyond drug transport, SLC47A1 has emerged as a critical regulator of cellular lipid metabolism and ferroptosis resistance. The protein acts as a lipid flippase that blocks ferroptosis by preventing ACSL4-SOAT1-mediated production of polyunsaturated fatty acid cholesterol esters, with expression regulated by PPARA 5. Epigenetic regulation through DNA methylation of a 5' CpG island contributes to interindividual variability in hepatic MATE1 expression, explaining pharmacokinetic differences not attributable to genetic variants alone 6.

Sources cited
1
SLC47A1 encodes MATE1 protein functioning as H+/organic cation antiporter for drug and metabolite efflux
PMID: 35710981
2
Meta-analysis showing SLC47A1 rs2289669 association with improved metformin response in type 2 diabetes
PMID: 35639991
3
SLC47A1 variants affecting metformin steady-state pharmacokinetics
PMID: 35905099
4
Study showing lack of significant effect of SLC47A1 polymorphisms on metformin response
PMID: 30433870
5
SLC47A1 functions as lipid flippase regulating ferroptosis through PPARA-mediated expression
PMID: 36575162
6
DNA methylation of SLC47A1 CpG island regulates hepatic MATE1 expression variability
PMID: 29070695
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.46Moderate
brain aneurysmOpen Targets
0.25Weak
goutOpen Targets
0.24Weak
kidney failureOpen Targets
0.19Weak
aneurysmOpen Targets
0.11Weak
VitiligoOpen Targets
0.07Suggestive
colorectal carcinomaOpen Targets
0.05Suggestive
type 2 diabetes mellitusOpen Targets
0.05Suggestive
hypoparathyroidism, familial isolated, 2Open Targets
0.04Suggestive
autosomal recessive hypophosphatemic ricketsOpen Targets
0.04Suggestive
osteoporosisOpen Targets
0.04Suggestive
postmenopausal osteoporosisOpen Targets
0.04Suggestive
carbamoyl phosphate synthetase I deficiency diseaseOpen Targets
0.03Suggestive
melorheostosisOpen Targets
0.03Suggestive
histidinemiaOpen Targets
0.03Suggestive
chronic myelogenous leukemiaOpen Targets
0.03Suggestive
hypermetabolism due to uncoupled mitochondrial oxidative phosphorylation 2Open Targets
0.03Suggestive
hyperostosis corticalis generalisataOpen Targets
0.03Suggestive
pyknoachondrogenesisOpen Targets
0.03Suggestive
pseudohypoparathyroidism type 2Open Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
SLC22A9Protein interaction77%SLC22A6Protein interaction76%SLCO1B3Protein interaction76%SLC22A8Protein interaction76%ABCG2Protein interaction76%SLCO1B1Protein interaction76%
Tissue Expression6 tissues
Liver
100%
Ovary
8%
Heart
8%
Lung
5%
Bone Marrow
4%
Brain
3%
Gene Interaction Network
Click a node to explore
SLC47A1SLC22A9SLC22A6SLCO1B3SLC22A8ABCG2SLCO1B1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q96FL8
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.10LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.88 [0.71–1.10]
RankingsWhere SLC47A1 stands among ~20K protein-coding genes
  • #7,123of 20,598
    Most Researched66
  • #11,303of 17,882
    Most Constrained (LOEUF)1.10
Genes detectedSLC47A1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Copper metabolism in cell death and autophagy.
PMID: 37055935
Autophagy · 2023
1.00
2
Advances in multi-omics study of biomarkers of glycolipid metabolism disorder.
PMID: 36382190
Comput Struct Biotechnol J · 2022
0.90
3
The lipid flippase SLC47A1 blocks metabolic vulnerability to ferroptosis.
PMID: 36575162
Nat Commun · 2022
0.80
4
Epigenomic and transcriptomic analyses define core cell types, genes and targetable mechanisms for kidney disease.
PMID: 35710981
Nat Genet · 2022
0.70
5
The influence of metformin transporter gene SLC22A1 and SLC47A1 variants on steady-state pharmacokinetics and glycemic response.
PMID: 35905099
PLoS One · 2022
0.60