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6 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SLC6A16
solute carrier family 6 member 16
Chromosome 19 · 19q13.33
NCBI Gene: 28968Ensembl: ENSG00000063127.16HGNC: HGNC:13622UniProt: Q9GZN6
6PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
amino acid transportsodium ion transmembrane transportplasma membraneneurotransmitter transmembrane transporter activitymultiple sclerosissystemic lupus erythematosuspneumonitisHypoglycemia
✦AI Summary

SLC6A16 (NTT5) is a sodium-dependent orphan transporter belonging to the solute carrier 6 (SLC6) family, located on chromosome 19.1-q13.4 1. As a member of the SLC6 family, it shares structural features with neurotransmitter and amino acid transporters, containing 12 predicted transmembrane domains with large extracellular loops 1. Computational modeling suggests SLC6A16 may transport negatively charged amino acids such as glutamate and aspartate, distinguishing it from other SLC6 members with conserved transport elements 2. Unlike the predominantly neuronal expression pattern of related orphan transporters, SLC6A16 shows significant expression in peripheral tissues, particularly the kidney 1. Gene expression studies reveal sex- and age-dependent variations in renal SLC6A16 expression, with notably higher levels in females under 50 years compared to older females, suggesting potential implications for personalized medicine and drug pharmacokinetics 3. Genome-wide association studies identified a significant SNP (rs73050610) in the TRPM4-SLC6A16 region associated with smoking initiation, indicating a potential role in complex behavioral phenotypes through neurotransmitter network modulation 4. The exact physiological substrates and functional mechanisms of SLC6A16 require further experimental validation.

Sources cited
1
SLC6A16 (NTT5) is an orphan transporter on chromosome 19q13.1-q13.4 with 12 transmembrane domains, primarily expressed in peripheral tissues including testis, pancreas, and prostate
PMID: 11112352
2
SLC6A16 computational modeling suggests it may transport negatively charged amino acids like glutamate and aspartate, with unusual composition of substrate transport pathway
PMID: 41558169
3
SLC6A16 expression in human kidney shows significant sex-age interactions, with higher expression in females under 50 years compared to older females
PMID: 25750709
4
A SNP in the TRPM4-SLC6A16 region on 19q13.33 is genome-wide significantly associated with smoking initiation, implicating complex neurotransmitter networks
PMID: 27134767
5
SLC6 orphan transporters, including SLC6A16, are members of the neurotransmitter transporter family that may function as amino acid transporters
PMID: 16540203
Disease Associationsⓘ20
multiple sclerosisOpen Targets
0.09Suggestive
systemic lupus erythematosusOpen Targets
0.08Suggestive
pneumonitisOpen Targets
0.08Suggestive
HypoglycemiaOpen Targets
0.06Suggestive
Down syndromeOpen Targets
0.02Suggestive
osteosarcomaOpen Targets
0.02Suggestive
infectionOpen Targets
0.01Suggestive
psoriasisOpen Targets
0.01Suggestive
clear cell renal carcinomaOpen Targets
0.00Suggestive
lung adenocarcinomaOpen Targets
0.00Suggestive
neoplasmOpen Targets
0.00Suggestive
rhabdomyosarcomaOpen Targets
0.00Suggestive
strokeOpen Targets
0.00Suggestive
bacterial diseaseOpen Targets
0.00Suggestive
pheochromocytomaOpen Targets
0.00Suggestive
papillary thyroid carcinomaOpen Targets
0.00Suggestive
abscessOpen Targets
0.00Suggestive
Cognitive impairmentOpen Targets
0.00Suggestive
hepatocellular carcinomaOpen Targets
0.00Suggestive
colorectal adenocarcinomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
SLC6A8Shared pathway75%SLC36A2Protein interaction74%SLC6A18Shared pathway67%SLC6A12Shared pathway60%SLC6A19Shared pathway50%SLC6A5Shared pathway40%
Tissue Expression6 tissues
Liver
100%
Ovary
75%
Lung
40%
Bone Marrow
28%
Heart
14%
Brain
7%
Gene Interaction Network
Click a node to explore
SLC6A16SLC6A8SLC36A2SLC6A18SLC6A12SLC6A19SLC6A5
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q9GZN6
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.94LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.75 [0.60–0.94]
RankingsWhere SLC6A16 stands among ~20K protein-coding genes
  • #18,209of 20,598
    Most Researched6
  • #8,726of 17,882
    Most Constrained (LOEUF)0.94
Genes detectedSLC6A16
Sources retrieved6 papers
Response time—
📄 Sources
6▼
1
Genome-wide time-to-event analysis on smoking progression stages in a family-based study.
PMID: 27134767
Brain Behav · 2016
1.00
2
Cloning and characterization of human NTT5 and v7-3: two orphan transporters of the Na+/Cl- -dependent neurotransmitter transporter gene family.
PMID: 11112352
Genomics · 2000
0.83
3
Expression of drug transporters in human kidney: impact of sex, age, and ethnicity.
PMID: 25750709
Biol Sex Differ · 2015
0.67
4
The SLC6 orphans are forming a family of amino acid transporters.
PMID: 16540203
Neurochem Int · 2006
0.50
5
Structure-based discovery of prescription drugs that interact with the norepinephrine transporter, NET.
PMID: 21885739
Proc Natl Acad Sci U S A · 2011
0.33