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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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SLC6A19
solute carrier family 6 member 19
Chromosome 5 Β· 5p15.33
NCBI Gene: 340024Ensembl: ENSG00000174358.16HGNC: HGNC:27960UniProt: Q695T7
33PubMed Papers
23Diseases
0Drugs
41Pathogenic Variants
FUNCTIONAL ROLE
Transporter
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingamino acid import across plasma membraneneutral L-amino acid transmembrane transporter activityextracellular exosomeHartnup diseaseiminoglycinuriaHyperglycinuriaclonal hematopoiesis
✦AI Summary

SLC6A19 encodes B0AT1, a sodium-dependent, chloride-independent transporter mediating resorption of neutral amino acids across apical membranes of renal and intestinal epithelial cells 123. The transporter requires tissue-specific ancillary proteinsβ€”CLTRN in kidney or ACE2 in intestineβ€”for proper cell surface expression and function 43. SLC6A19 is particularly critical for tryptophan absorption, which serves as a precursor for NAD synthesis; maternal heterozygosity impairs tryptophan availability during pregnancy, causing metabolic perturbation and congenital NAD deficiency disorder in mice 5. Loss-of-function SLC6A19 mutations cause Hartnup disorder, characterized by elevated urinary neutral amino acids, pellagra-like rashes, ataxia, and neurological symptoms including seizures 6. Additionally, SLC6A19 mutations lead to hyperglycinuria and increased nephrolithiasis risk due to elevated urinary glycine and oxalate 7. Pharmacological SLC6A19 inhibition represents a novel therapeutic approach for phenylketonuria, increasing urinary phenylalanine excretion and reducing toxic plasma levels 8. Reduced SLC6A19 expression in inflammatory bowel disease patients correlates with disease activity and tryptophan deficiency, suggesting a potential role in intestinal homeostasis 9.

Sources cited
1
SLC6A19 mediates sodium-dependent resorption of neutral amino acids across epithelial cell apical membranes
PMID: 15286787
2
SLC6A19 transporter function is sodium-dependent and chloride-independent
PMID: 15286788
3
SLC6A19 requires ACE2 in intestine for cell surface expression and amino acid transport activity
PMID: 19185582
4
SLC6A19 requires CLTRN in kidney for proper function
PMID: 18424768
5
SLC6A19 heterozygosity impairs tryptophan availability for NAD synthesis, causing congenital NAD deficiency disorder
PMID: 36374036
6
SLC6A19 mutations cause autosomal-recessive Hartnup disorder with seizures and neurological symptoms
PMID: 20399395
7
SLC6A19 mutations cause hyperglycinuria and increase nephrolithiasis risk
PMID: 36434624
8
SLC6A19 inhibition increases urinary phenylalanine excretion and reduces plasma phenylalanine in PKU
PMID: 39513367
9
SLC6A19 expression is decreased in inflammatory bowel disease and correlates with disease activity
PMID: 28827067
Disease Associationsβ“˜23
Hartnup diseaseOpen Targets
0.85Strong
iminoglycinuriaOpen Targets
0.64Moderate
HyperglycinuriaOpen Targets
0.62Moderate
clonal hematopoiesisOpen Targets
0.27Weak
frozen shoulderOpen Targets
0.23Weak
genetic disorderOpen Targets
0.19Weak
myopiaOpen Targets
0.11Weak
pathological myopiaOpen Targets
0.11Weak
colorectal carcinomaOpen Targets
0.09Suggestive
Griscelli diseaseOpen Targets
0.08Suggestive
Griscelli disease type 3Open Targets
0.08Suggestive
Griscelli syndrome type 3Open Targets
0.08Suggestive
renal cell carcinomaOpen Targets
0.07Suggestive
Barrett's esophagusOpen Targets
0.07Suggestive
uncombable hair syndromeOpen Targets
0.07Suggestive
hepatocellular carcinomaOpen Targets
0.06Suggestive
nonpapillary renal cell carcinomaOpen Targets
0.06Suggestive
oculocutaneous albinism type 3Open Targets
0.06Suggestive
neoplasmOpen Targets
0.06Suggestive
Griscelli disease type 1Open Targets
0.06Suggestive
Hartnup disorderUniProt
HyperglycinuriaUniProt
IminoglycinuriaUniProt
Pathogenic Variants41
NM_001003841.3(SLC6A19):c.517G>A (p.Asp173Asn)Pathogenic
Neutral 1 amino acid transport defect|not provided|Neutral 1 amino acid transport defect;Hyperglycinuria;Iminoglycinuria|not specified|SLC6A19-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 173
NM_001003841.3(SLC6A19):c.1173+2T>GPathogenic
Neutral 1 amino acid transport defect|not provided|SLC6A19-related disorder
β˜…β˜…β˜†β˜†2025
NM_001003841.3(SLC6A19):c.532C>T (p.Arg178Ter)Pathogenic
Neutral 1 amino acid transport defect|Neutral 1 amino acid transport defect;Iminoglycinuria;Hyperglycinuria|not provided|SLC6A19-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 178
NM_001003841.3(SLC6A19):c.850G>A (p.Gly284Arg)Pathogenic
not provided|Neutral 1 amino acid transport defect
β˜…β˜…β˜†β˜†2025β†’ Residue 284
NM_001003841.3(SLC6A19):c.1173+2T>CPathogenic
Neutral 1 amino acid transport defect|not provided
β˜…β˜…β˜†β˜†2024
NM_001003841.3(SLC6A19):c.718C>T (p.Arg240Ter)Pathogenic
Neutral 1 amino acid transport defect|Neutral 1 amino acid transport defect;Hyperglycinuria;Iminoglycinuria|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 240
NM_001003841.3(SLC6A19):c.1169C>G (p.Ser390Ter)Likely pathogenic
Neutral 1 amino acid transport defect
β˜…β˜…β˜†β˜†2024β†’ Residue 390
NM_001003841.3(SLC6A19):c.1550A>G (p.Asp517Gly)Likely pathogenic
Neutral 1 amino acid transport defect
β˜…β˜…β˜†β˜†2024β†’ Residue 517
NM_001003841.3(SLC6A19):c.1501G>A (p.Glu501Lys)Pathogenic
not provided|Neutral 1 amino acid transport defect
β˜…β˜…β˜†β˜†2023β†’ Residue 501
NM_001003841.3(SLC6A19):c.277G>A (p.Gly93Arg)Likely pathogenic
not provided|Neutral 1 amino acid transport defect
β˜…β˜…β˜†β˜†2022β†’ Residue 93
NM_001003841.3(SLC6A19):c.277G>T (p.Gly93Trp)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2026β†’ Residue 93
NM_001003841.3(SLC6A19):c.810del (p.Asp270fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 270
NM_001003841.3(SLC6A19):c.1016+1G>ALikely pathogenic
Neutral 1 amino acid transport defect|Gastric cancer
β˜…β˜†β˜†β˜†2025
NM_001003841.3(SLC6A19):c.587G>A (p.Trp196Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 196
NM_001003841.3(SLC6A19):c.663+1G>ALikely pathogenic
not provided
β˜…β˜†β˜†β˜†2024
NM_001003841.3(SLC6A19):c.1602G>A (p.Trp534Ter)Likely pathogenic
Neutral 1 amino acid transport defect
β˜…β˜†β˜†β˜†2024β†’ Residue 534
NM_001003841.3(SLC6A19):c.834dup (p.Phe279fs)Likely pathogenic
Neutral 1 amino acid transport defect
β˜…β˜†β˜†β˜†2024β†’ Residue 279
NM_001003841.3(SLC6A19):c.609_610insA (p.Ala204fs)Likely pathogenic
Neutral 1 amino acid transport defect
β˜…β˜†β˜†β˜†2024β†’ Residue 204
NM_001003841.3(SLC6A19):c.1601G>A (p.Trp534Ter)Likely pathogenic
Neutral 1 amino acid transport defect
β˜…β˜†β˜†β˜†2024β†’ Residue 534
NM_001003841.3(SLC6A19):c.1736C>T (p.Pro579Leu)Likely pathogenic
Neutral 1 amino acid transport defect
β˜…β˜†β˜†β˜†2024β†’ Residue 579
View on ClinVar β†—
Related Genes
SLC36A2Protein interaction96%SLC3A1Protein interaction77%SLC7A9Protein interaction77%SLC1A5Protein interaction72%ACE2Protein interaction72%SLC6A16Shared pathway50%
Tissue Expression6 tissues
Liver
100%
Bone Marrow
10%
Brain
1%
Ovary
0%
Heart
0%
Lung
0%
Gene Interaction Network
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SLC6A19SLC36A2SLC3A1SLC7A9SLC1A5ACE2SLC6A16
PROTEIN STRUCTURE
Preparing viewer…
PDB6M17 Β· 2.90 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.20LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.98 [0.81–1.20]
RankingsWhere SLC6A19 stands among ~20K protein-coding genes
  • #11,418of 20,598
    Most Researched33
  • #1,526of 5,498
    Most Pathogenic Variants41
  • #12,618of 17,882
    Most Constrained (LOEUF)1.20
Genes detectedSLC6A19
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
SLC6A19 inhibition facilitates urinary neutral amino acid excretion and lowers plasma phenylalanine.
PMID: 39513367
JCI Insight Β· 2024
1.00
2
Increased Tryptophan Metabolism Is Associated With Activity of Inflammatory Bowel Diseases.
PMID: 28827067
Gastroenterology Β· 2017
0.90
3
Structural basis for the recognition of SARS-CoV-2 by full-length human ACE2.
PMID: 32132184
Science Β· 2020
0.80
4
The SLC6A19 gene mutation in a young man with hyperglycinuria and nephrolithiasis: a case report and literature review.
PMID: 36434624
BMC Urol Β· 2022
0.70
5
SLC6A19 is a novel putative gene, induced by dioxins via AhR in human hepatoma HepG2 cells.
PMID: 29522993
Environ Pollut Β· 2018
0.60