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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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SLFN12
schlafen family member 12
Chromosome 17 · 17q12
NCBI Gene: 55106Ensembl: ENSG00000172123.15HGNC: HGNC:25500UniProt: Q8IYM2
21PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
RNA nuclease activityprotein bindingribosome bindingrRNA catabolic processneurodegenerative diseasetriple-negative breast cancerRomano-Ward syndromeisolated agammaglobulinemia
✦AI Summary

SLFN12 is a ribonuclease that functions as a pro-apoptotic protein activated through estrogen-dependent and drug-induced pathways 1. Primary function: SLFN12 possesses intrinsic RNase activity that is significantly enhanced upon binding to phosphodiesterase 3A (PDE3A) 1. Mechanism: E2 and small molecule "velcrins" (including anagrelide, DNMDP, and nauclefine) stabilize the PDE3A-SLFN12 heterotetramer complex in the cytosol, promoting dephosphorylation and activating SLFN12's rRNA ribonuclease activity, which blocks protein translation and triggers apoptosis 2. This pathway operates particularly in tissues with high E2 concentration, with potential relevance to placental remodeling 1. Disease relevance: SLFN12 overexpression sensitizes triple-negative breast cancer cells to chemotherapy and radiotherapy by reducing CHK1/CHK2 phosphorylation, reducing DNA damage checkpoint activation 3. SLFN12 expression correlates with improved survival in triple-negative breast cancer 3. Clinical significance: SLFN12 may serve as a biomarker to predict and customize radiotherapy and chemotherapy responses 3. Recent clinical trials of PDE3A-SLFN12 complex inducers have encountered dose-limiting thrombocytopenia due to high PDE3A expression in platelets 4. Additionally, SLFN12 regulates human enterocyte differentiation through interactions with SERPB12 and deubiquitylases 5.

Sources cited
1
SLFN12 possesses RNase activity that is enhanced by PDE3A binding; velcrins induce PDE3A-SLFN12 complex formation
PMID: 34272366
2
E2 and small molecules stabilize PDE3A-SLFN12 heterotetramer, activating SLFN12 rRNA ribonuclease activity to block translation and trigger apoptosis
PMID: 34707099
3
SLFN12 overexpression sensitizes triple-negative breast cancer to chemotherapy and radiotherapy; SLFN12 expression correlates with improved TNBC survival
PMID: 35430566
4
Clinical trial of PDE3A-SLFN12 complex inducer BAY 2666605 encountered mechanism-based thrombocytopenia due to high PDE3A expression in platelets
PMID: 39437010
5
SLFN12 regulates human enterocyte differentiation through SERPB12 and deubiquitylase-mediated pathways
PMID: 30045019
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.50Moderate
triple-negative breast cancerOpen Targets
0.09Suggestive
Romano-Ward syndromeOpen Targets
0.08Suggestive
isolated agammaglobulinemiaOpen Targets
0.08Suggestive
Familial progressive cardiac conduction defectOpen Targets
0.08Suggestive
lung adenocarcinomaOpen Targets
0.08Suggestive
familial atrial fibrillationOpen Targets
0.07Suggestive
Familial short QT syndromeOpen Targets
0.07Suggestive
catecholaminergic polymorphic ventricular tachycardiaOpen Targets
0.07Suggestive
severe combined immunodeficiency due to CARD11 deficiencyOpen Targets
0.07Suggestive
Brugada syndromeOpen Targets
0.07Suggestive
Arrhythmogenic right ventricular dysplasiaOpen Targets
0.07Suggestive
hypertrophic cardiomyopathyOpen Targets
0.07Suggestive
Rare familial disorder with hypertrophic cardiomyopathyOpen Targets
0.07Suggestive
Autosomal recessive hyper-IgE syndromeOpen Targets
0.07Suggestive
Chronic mucocutaneous candidosisOpen Targets
0.07Suggestive
atrial fibrillationOpen Targets
0.06Suggestive
immunodeficiency 18Open Targets
0.06Suggestive
Autosomal recessive hyper-IgE syndrome due to TYK2 deficiencyOpen Targets
0.06Suggestive
immunodeficiency 35Open Targets
0.06Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
PDE3AProtein interaction75%SLFN12LShared pathway50%SLFN5Shared pathway50%TM2D1Shared pathway50%TRIRShared pathway50%DAPL1Shared pathway33%
Tissue Expression6 tissues
Lung
100%
Ovary
69%
Heart
65%
Bone Marrow
38%
Liver
17%
Brain
17%
Gene Interaction Network
Click a node to explore
SLFN12PDE3ASLFN12LSLFN5TM2D1TRIRDAPL1
PROTEIN STRUCTURE
Preparing viewer…
PDB7LRE · 2.76 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.22LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.87 [0.63–1.22]
RankingsWhere SLFN12 stands among ~20K protein-coding genes
  • #14,019of 20,598
    Most Researched21
  • #12,894of 17,882
    Most Constrained (LOEUF)1.22
Genes detectedSLFN12
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Discovering the anti-cancer potential of non-oncology drugs by systematic viability profiling.
PMID: 32613204
Nat Cancer · 2020
1.00
2
First-in-Human Dose-Escalation Study of the First-in-Class PDE3A-SLFN12 Complex Inducer BAY 2666605 in Patients with Advanced Solid Tumors Coexpressing SLFN12 and PDE3A.
PMID: 39437010
Clin Cancer Res · 2024
0.90
3
Overview of Structural and Functional Insights of SLFN12 Associated With Different Diseases.
PMID: 38832156
Cureus · 2024
0.80
4
Schlafen 12 Interaction with SerpinB12 and Deubiquitylases Drives Human Enterocyte Differentiation.
PMID: 30045019
Cell Physiol Biochem · 2018
0.70
5
Structure of PDE3A-SLFN12 complex reveals requirements for activation of SLFN12 RNase.
PMID: 34272366
Nat Commun · 2021
0.60