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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SMAD6
SMAD family member 6
Chromosome 15 · 15q22.31
NCBI Gene: 4091Ensembl: ENSG00000137834.16HGNC: HGNC:6772UniProt: O43541
126PubMed Papers
23Diseases
0Drugs
82Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
transcription cis-regulatory region bindingchromatin bindingprotein bindingubiquitin protein ligase bindingfamilial bicuspid aortic valvecongenital radioulnar synostosisaortic valve disease 2Abnormality of the skeletal system
✦AI Summary

SMAD6 is an inhibitory SMAD protein that negatively regulates multiple signaling pathways, particularly the TGF-β and BMP pathways. As an intracellular mediator, SMAD6 blocks BMP-SMAD1 signaling by competing with SMAD4 for receptor-activated SMAD1 binding, thereby inhibiting downstream transcriptional responses 1. The protein functions as a critical regulator in tissue development and homeostasis, with SMAD6 upregulation serving to block TGF-β signaling pathways in hepatic stellate cells 2. SMAD6 also plays important roles in pulmonary fibrosis regulation and myofibroblast differentiation processes 34. Disease-wise, SMAD6 variants are significantly associated with craniosynostosis, particularly metopic synostosis, with an 18.3-fold enrichment of loss-of-function variants compared to population controls 5. The gene is also linked to congenital heart diseases including bicuspid aortic valve and aortic aneurysms 6, as well as primary open-angle glaucoma 1. Additionally, SMAD6 variants have been identified in autism spectrum disorder and intellectual disability cases 7. The remarkable phenotypic diversity associated with similar SMAD6 variants suggests complex modifier mechanisms that remain poorly understood 8.

Sources cited
1
SMAD6 identified as risk loci for primary open-angle glaucoma through genome-wide meta-analysis
PMID: 33627673
2
18.3-fold enrichment of loss-of-function SMAD6 variants in craniosynostosis, especially metopic synostosis
PMID: 32499606
3
SMAD6 upregulation blocks TGF-β signaling pathway in hepatic stellate cells
PMID: 39693275
4
SMAD6 identified as endothelial transcription factor involved in lung fibrogenesis
PMID: 37137915
5
STAT3 promotes transcription of SMAD6 among other target genes in fibroblast-to-myofibroblast differentiation
PMID: 40464702
6
SMAD6 mentioned as causative gene mutation for bicuspid aortic valve cases
PMID: 30455415
7
Pathogenic SMAD6 variant detected in autism/intellectual disability patient cohort
PMID: 34948243
8
Review discussing phenotypic diversity of SMAD6-related conditions and unclear genotype-phenotype correlations
PMID: 36414630
Disease Associationsⓘ23
familial bicuspid aortic valveOpen Targets
0.70Strong
congenital radioulnar synostosisOpen Targets
0.66Moderate
aortic valve disease 2Open Targets
0.63Moderate
Abnormality of the skeletal systemOpen Targets
0.50Moderate
open-angle glaucomaOpen Targets
0.48Moderate
aortic stenosisOpen Targets
0.48Moderate
genetic disorderOpen Targets
0.47Moderate
colorectal cancerOpen Targets
0.47Moderate
craniosynostosisOpen Targets
0.46Moderate
congenital heart diseaseOpen Targets
0.45Moderate
carpal tunnel syndromeOpen Targets
0.45Moderate
Abnormal heart morphologyOpen Targets
0.43Moderate
spinal stenosisOpen Targets
0.43Moderate
Abnormal facial skeleton morphologyOpen Targets
0.42Moderate
polydactylyOpen Targets
0.42Moderate
benign colon neoplasmOpen Targets
0.41Moderate
hypertensionOpen Targets
0.37Weak
Metopic synostosisOpen Targets
0.37Weak
syndromic craniosynostosisOpen Targets
0.37Weak
Frontal bossingOpen Targets
0.36Weak
Aortic valve disease 2UniProt
Craniosynostosis 7UniProt
Radioulnar synostosis, non-syndromicUniProt
Pathogenic Variants82
NM_005585.5(SMAD6):c.232_250del (p.Gln78fs)Pathogenic
Aortic valve disease 2|Radioulnar synostosis|not provided
★★☆☆2026→ Residue 78
NM_005585.5(SMAD6):c.652C>T (p.Gln218Ter)Pathogenic
Aortic valve disease 2;Radioulnar synostosis|not provided|Aortic valve disease 2|Radioulnar synostosis, nonsyndromic, susceptibility to
★★☆☆2026→ Residue 218
NM_005585.5(SMAD6):c.792C>A (p.Tyr264Ter)Pathogenic
not provided|Aortic valve disease 2
★★☆☆2025→ Residue 264
NM_005585.5(SMAD6):c.789del (p.Tyr264fs)Pathogenic
Aortic valve disease 2|not provided
★★☆☆2025→ Residue 264
NM_005585.5(SMAD6):c.1108C>T (p.Gln370Ter)Likely pathogenic
not provided|Radioulnar synostosis, nonsyndromic, susceptibility to
★★☆☆2024→ Residue 370
NM_005585.5(SMAD6):c.840dup (p.Arg281fs)Pathogenic
Inborn genetic diseases|not provided
★★☆☆2024→ Residue 281
NM_005585.5(SMAD6):c.467_473dup (p.Ser158fs)Pathogenic
Radioulnar synostosis, nonsyndromic, susceptibility to;Aortic valve disease 2;Craniosynostosis 7|Aortic valve disease 2
★★☆☆2024→ Residue 158
NM_005585.5(SMAD6):c.1451G>T (p.Cys484Phe)Pathogenic
Aortic valve disease 2|Craniosynostosis 7
★☆☆☆2026→ Residue 484
NM_005585.5(SMAD6):c.467_473del (p.Gly156fs)Pathogenic
Aortic valve disease 2
★☆☆☆2026→ Residue 156
NM_005585.5(SMAD6):c.789dup (p.Tyr264fs)Pathogenic
Aortic valve disease 2
★☆☆☆2025→ Residue 264
NM_005585.5(SMAD6):c.869del (p.Pro290fs)Pathogenic
Aortic valve disease 2
★☆☆☆2025→ Residue 290
NM_005585.5(SMAD6):c.103G>T (p.Glu35Ter)Pathogenic
Aortic valve disease 2
★☆☆☆2025→ Residue 35
NM_005585.5(SMAD6):c.1011G>A (p.Trp337Ter)Likely pathogenic
not provided
★☆☆☆2025→ Residue 337
NM_005585.5(SMAD6):c.913del (p.Ala305fs)Likely pathogenic
Inborn genetic diseases
★☆☆☆2025→ Residue 305
NM_005585.5(SMAD6):c.344G>A (p.Trp115Ter)Pathogenic
Cardiogenetic disease
★☆☆☆2025→ Residue 115
NM_005585.5(SMAD6):c.345G>A (p.Trp115Ter)Pathogenic
Radioulnar synostosis|not provided
★☆☆☆2025→ Residue 115
NM_005585.5(SMAD6):c.827dup (p.Pro277fs)Likely pathogenic
not provided
★☆☆☆2025→ Residue 277
NM_005585.5(SMAD6):c.1008C>G (p.Tyr336Ter)Likely pathogenic
not provided
★☆☆☆2025→ Residue 336
NM_005585.5(SMAD6):c.136del (p.Ala46fs)Likely pathogenic
Radioulnar synostosis|not provided
★☆☆☆2025→ Residue 46
NM_005585.5(SMAD6):c.810C>A (p.Cys270Ter)Likely pathogenic
not provided
★☆☆☆2025→ Residue 270
View on ClinVar ↗
Related Genes
TGFBR1Protein interaction100%NEDD4LProtein interaction100%BMP4Protein interaction100%WWP1Protein interaction97%TGFB2Protein interaction96%WWP2Protein interaction95%
Tissue Expression6 tissues
Lung
100%
Heart
39%
Liver
36%
Ovary
24%
Brain
6%
Bone Marrow
4%
Gene Interaction Network
Click a node to explore
SMAD6TGFBR1NEDD4LBMP4WWP1TGFB2WWP2
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt O43541
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
2.00LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF2.79 [1.83–2.00]
RankingsWhere SMAD6 stands among ~20K protein-coding genes
  • #3,746of 20,598
    Most Researched126 · top quartile
  • #908of 5,498
    Most Pathogenic Variants82 · top quartile
  • #17,837of 17,882
    Most Constrained (LOEUF)2.00
Genes detectedSMAD6
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Lung endothelial cells regulate pulmonary fibrosis through FOXF1/R-Ras signaling.
PMID: 37137915
Nat Commun · 2023
1.00
2
SMAD6 variants in craniosynostosis: genotype and phenotype evaluation.
PMID: 32499606
Genet Med · 2020
0.90
3
Lhx2 specifically expressed in HSCs promotes liver regeneration and inhibits liver fibrosis.
PMID: 39693275
Hepatology · 2025
0.80
4
Genome-wide meta-analysis identifies 127 open-angle glaucoma loci with consistent effect across ancestries.
PMID: 33627673
Nat Commun · 2021
0.70
5
New Candidates for Autism/Intellectual Disability Identified by Whole-Exome Sequencing.
PMID: 34948243
Int J Mol Sci · 2021
0.60