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SMG9
SMG9 nonsense mediated mRNA decay factor
Chromosome 19 Β· 19q13.31
NCBI Gene: 56006Ensembl: ENSG00000105771.15HGNC: HGNC:25763UniProt: Q9H0W8
49PubMed Papers
22Diseases
0Drugs
13Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
nuclear-transcribed mRNA catabolic process, nonsense-mediated decayprotein bindingnegative regulation of apoptotic processidentical protein bindingAutosomal dominant deafness-onychodystrophy syndromeneurodevelopmental disorder with intention tremor, pyramidal signs, dyspraxia, and ocular anomaliesgenetic disorderGlobal developmental delay
✦AI Summary

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SMG9 nonsense mediated mRNA decay factor

⚠Limited data available β€” This gene has 0 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜22
Autosomal dominant deafness-onychodystrophy syndromeOpen Targets
0.64Moderate
neurodevelopmental disorder with intention tremor, pyramidal signs, dyspraxia, and ocular anomaliesOpen Targets
0.55Moderate
genetic disorderOpen Targets
0.41Moderate
Global developmental delayOpen Targets
0.33Weak
Abnormal cardiovascular system morphologyOpen Targets
0.33Weak
Abnormal facial shapeOpen Targets
0.33Weak
autism spectrum disorderOpen Targets
0.33Weak
Brainstem dysplasiaOpen Targets
0.33Weak
Neurodevelopmental abnormalityOpen Targets
0.33Weak
gliomaOpen Targets
0.08Suggestive
hepatocellular carcinomaOpen Targets
0.08Suggestive
Isolated anencephaly/exencephalyOpen Targets
0.05Suggestive
neural tube defects, folate-sensitiveOpen Targets
0.05Suggestive
Duane-radial ray syndromeOpen Targets
0.05Suggestive
anencephaly 1Open Targets
0.04Suggestive
hemoglobin D diseaseOpen Targets
0.04Suggestive
8q24.3 microdeletion syndromeOpen Targets
0.04Suggestive
3C syndromeOpen Targets
0.04Suggestive
PHACE syndromeOpen Targets
0.04Suggestive
Noonan syndromeOpen Targets
0.04Suggestive
Heart and brain malformation syndromeUniProt
Neurodevelopmental disorder with intention tremor, pyramidal signs, dyspraxia, and ocular anomaliesUniProt
Pathogenic Variants13
NM_019108.4(SMG9):c.749dup (p.Asn251fs)Pathogenic
Fetal anomalies with a likely genetic cause
β˜…β˜†β˜†β˜†2026β†’ Residue 251
NM_019108.4(SMG9):c.909G>T (p.Gln303His)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 303
NM_019108.4(SMG9):c.240dup (p.Pro81fs)Pathogenic
Neurodevelopmental disorder with intention tremor, pyramidal signs, dyspraxia, and ocular anomalies
β˜…β˜†β˜†β˜†2025β†’ Residue 81
NM_019108.4(SMG9):c.441C>A (p.Tyr147Ter)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 147
NM_019108.4(SMG9):c.195del (p.Ile66fs)Pathogenic
Neurodevelopmental disorder with intention tremor, pyramidal signs, dyspraxia, and ocular anomalies
β˜…β˜†β˜†β˜†2024β†’ Residue 66
NM_019108.4(SMG9):c.1426C>T (p.Gln476Ter)Pathogenic
Neurodevelopmental disorder with intention tremor, pyramidal signs, dyspraxia, and ocular anomalies
β˜…β˜†β˜†β˜†2024β†’ Residue 476
NM_019108.4(SMG9):c.22C>T (p.Gln8Ter)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 8
NM_019108.4(SMG9):c.787G>T (p.Glu263Ter)Pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2021β†’ Residue 263
NM_019108.4(SMG9):c.610dup (p.Val204fs)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2020β†’ Residue 204
NM_019108.4(SMG9):c.520_521del (p.Pro174fs)Likely pathogenic
Heart and brain malformation syndrome|Brainstem dysplasia;Abnormal facial shape;Abnormal cardiovascular system morphology;Global developmental delay
β˜…β˜†β˜†β˜†2013β†’ Residue 174
NM_019108.4(SMG9):c.1508G>C (p.Trp503Ser)Pathogenic
Heart and brain malformation syndrome
β˜†β˜†β˜†β˜†2024β†’ Residue 503
NM_019108.4(SMG9):c.1177C>T (p.Gln393Ter)Pathogenic
Neurodevelopmental abnormality|Heart and brain malformation syndrome
β˜†β˜†β˜†β˜†2023β†’ Residue 393
NM_019108.4(SMG9):c.551T>C (p.Val184Ala)Pathogenic
Neurodevelopmental disorder with intention tremor, pyramidal signs, dyspraxia, and ocular anomalies
β˜†β˜†β˜†β˜†2022β†’ Residue 184
View on ClinVar β†—
Related Genes
UPF3AProtein interaction99%ETF1Protein interaction96%UPF1Protein interaction94%SMG7Protein interaction94%SMG1Protein interaction94%SMG6Protein interaction94%
Tissue Expression6 tissues
Lung
100%
Bone Marrow
93%
Brain
86%
Ovary
83%
Liver
74%
Heart
50%
Gene Interaction Network
Click a node to explore
SMG9UPF3AETF1UPF1SMG7SMG1SMG6
PROTEIN STRUCTURE
Preparing viewer…
PDB7PW8 Β· 2.82 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.05LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.83 [0.66–1.05]
RankingsWhere SMG9 stands among ~20K protein-coding genes
  • #9,018of 20,598
    Most Researched49
  • #2,616of 5,498
    Most Pathogenic Variants13
  • #10,504of 17,882
    Most Constrained (LOEUF)1.05
Genes detectedSMG9
Sources retrieved0 papers
Response timeβ€”