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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SMYD3
SET and MYND domain containing 3
Chromosome 1 · 1q44
NCBI Gene: 64754Ensembl: ENSG00000185420.19HGNC: HGNC:15513UniProt: B3KN46
136PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingnucleushistone H4 methyltransferase activitynegative regulation of DNA-templated transcriptionAbruptio Placentaeovarian neoplasmParkinson diseaseexostosis
✦AI Summary

SMYD3 is a histone methyltransferase that catalyzes di- and tri-methylation of histone H3 lysine 4 (H3K4me3) and methylates histone H4 lysine 5, functioning as a transcriptional amplifier within RNA polymerase II complexes 12. Beyond histones, SMYD3 methylates non-histone substrates including MAP3K2, IRF3, c-MYC, and RNF113A, modulating diverse signaling pathways 3456. SMYD3 is significantly upregulated across multiple cancer types, with overexpression associated with poor overall survival (HR=1.81) and adverse clinicopathological features including lymph node metastasis, larger tumor size, and advanced TNM stage 7. In solid tumors, SMYD3 acts as a nuclear transcriptional amplifier of oncogenes and proliferation-controlling genes; in lung and pancreatic cancers, it functions cytoplasmically to potentiate oncogenic Ras/ERK signaling 3. In chr1 myeloid leukemia, SMYD3 maintains leukemia stem cell self-renewal by activating fatty acid β-oxidation through the FABP5/PPARD/CPT1A axis 8. Conversely, SMYD3 negatively regulates antiviral immunity by dimethylating IRF3, suppressing type I interferon production 4. These multifaceted roles establish SMYD3 as both a cancer prognostic biomarker and emerging therapeutic target.

Sources cited
1
SMYD3 methylates H3K4 and participates in RNA polymerase complexes for transcriptional activation
PMID: 15235609
2
SMYD3 catalyzes di- and tri-methylation of H3K4 and methylates H4K5
PMID: 22419068
3
SMYD3 overexpression associated with poor overall survival and adverse clinicopathological features in multiple cancer types
PMID: 35763383
4
SMYD3 functions as nuclear transcriptional amplifier in liver/colon cancers and cytoplasmic potentiator of Ras/ERK signaling in lung/pancreatic cancers
PMID: 27554136
5
SMYD3 dimethylates IRF3 at lysine 39, attenuating antiviral innate immunity and type I interferon production
PMID: 39813248
6
SMYD3 maintains leukemia stem cell self-renewal by activating fatty acid β-oxidation through FABP5/PPARD/CPT1A signaling
PMID: 40080525
7
SMYD3 methylates c-MYC at K158/K163, promoting colorectal cancer stem cell stemness and tumorigenicity
PMID: 40588481
8
SMYD3 methylates RNF113A, impairing alkylation damage response and promoting chemoresistance in small cell lung cancer
PMID: 35819319
9
Comprehensive review of SMYD3 as chromatin modifier with histone and non-histone substrates in cancer
PMID: 33637115
10
SMYD3 drives oncogenic pathways through epigenetic and signaling mechanisms across cancer types
PMID: 31935919
Disease Associationsⓘ20
Abruptio PlacentaeOpen Targets
0.30Weak
ovarian neoplasmOpen Targets
0.29Weak
Parkinson diseaseOpen Targets
0.28Weak
bronchial diseaseOpen Targets
0.28Weak
exostosisOpen Targets
0.28Weak
Alzheimer diseaseOpen Targets
0.27Weak
liver diseaseOpen Targets
0.27Weak
AlkalosisOpen Targets
0.25Weak
injuryOpen Targets
0.24Weak
Cerebral degenerationOpen Targets
0.24Weak
ocular hypotensionOpen Targets
0.24Weak
rubellaOpen Targets
0.23Weak
PruritusOpen Targets
0.23Weak
Abnormal nasolacrimal system morphologyOpen Targets
0.23Weak
esophageal ulcerOpen Targets
0.23Weak
male infertilityOpen Targets
0.23Weak
cerebellar dysfunction with variable cognitive and behavioral abnormalitiesOpen Targets
0.12Weak
Non-progressive cerebellar ataxia with intellectual disabilityOpen Targets
0.12Weak
Primary amenorrheaOpen Targets
0.12Weak
neoplasmOpen Targets
0.12Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
H3-4Protein interaction100%H3-3BProtein interaction100%H3C13Protein interaction100%H3C12Protein interaction100%H3-5Protein interaction100%ASH2LProtein interaction98%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
56%
Heart
45%
Lung
20%
Ovary
14%
Liver
11%
Gene Interaction Network
Click a node to explore
SMYD3H3-4H3-3BH3C13H3C12H3-5ASH2L
PROTEIN STRUCTURE
Preparing viewer…
PDB6P7Z · 1.19 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.90LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.66 [0.49–0.90]
RankingsWhere SMYD3 stands among ~20K protein-coding genes
  • #3,415of 20,598
    Most Researched136 · top quartile
  • #8,085of 17,882
    Most Constrained (LOEUF)0.90
Genes detectedSMYD3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Clinicopathological and Prognostic Significance of
PMID: 35763383
Genet Test Mol Biomarkers · 2022
1.00
2
Smyd3-associated regulatory pathways in cancer.
PMID: 27554136
Semin Cancer Biol · 2017
0.90
3
SMYD3 Activates Fatty Acid β-Oxidation to Promote Self-Renewal of Leukemia Stem Cells.
PMID: 40080525
Cancer Res · 2025
0.80
4
Direct lysine dimethylation of IRF3 by the methyltransferase SMYD3 attenuates antiviral innate immunity.
PMID: 39813248
Proc Natl Acad Sci U S A · 2025
0.70
5
SMYD3: a regulator of epigenetic and signaling pathways in cancer.
PMID: 33637115
Clin Epigenetics · 2021
0.60