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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SNX3
sorting nexin 3
Chromosome 6 · 6q21
NCBI Gene: 8724Ensembl: ENSG00000112335.16HGNC: HGNC:11174UniProt: O60493
98PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
early endosome membranecytoplasmearly endosomecytosolneurodegenerative diseaseParkinson diseaseAlzheimer diseaselysosomal storage disease
✦AI Summary

SNX3 (sorting nexin 3) is a retromer complex component that regulates endosomal trafficking and recycling of cargo proteins. As a phosphatidylinositol 3-phosphate (PtdIns3P)-binding protein, SNX3 mediates multivesicular body formation and is essential for recycling the Wnt morphogen transporter Wntless (WLS) from endosomes back to the Golgi 1. SNX3 assembles with an evolutionary conserved MON2-DOPEY2-ATP9A complex to facilitate WLS sorting and Wnt secretion 2. The SNX3-retromer pathway controls WNT signaling levels, as demonstrated by impaired WLS recycling and lysosomal degradation in SNX3-deficient cells, which causes neural tube closure defects in mice and correlates with human neural tube defects 3. In cancer biology, SNX3 plays a paradoxical role: it mediates EGFR recycling in triple-negative breast cancers, where low SNX3 and high EGFR levels correlate with poor survival and increased metastasis 4. Additionally, SNX3-retromer suppression by honokiol enhances cetuximab sensitivity in KRAS-mutant colorectal cancer by impairing lysosomal proteolysis and blocking autophagy and macropinocytosis 5. SNX3 expression is also regulated in osteosarcoma through the LINC01614-miR-520a-3p axis, affecting tumor progression 6.

Sources cited
1
SNX3 is a PtdIns3P-binding protein required for multivesicular body formation and membrane invagination
PMID: 18767904
2
SNX3-retromer associates with MON2-DOPEY2-ATP9A complex to mediate Wntless sorting and Wnt secretion
PMID: 30213940
3
SNX3 is essential for WLS recycling and WNT signaling; mutations cause neural tube defects via impaired WNT pathway
PMID: 33214242
4
SNX3 mediates EGFR recycling in triple-negative breast cancer; low SNX3 correlates with poor survival and increased metastasis
PMID: 34718348
5
SNX3-retromer suppression impairs lysosomal proteolysis and autophagy, enhancing cetuximab sensitivity in KRAS-mutant colorectal cancer
PMID: 39310106
6
SNX3 expression is regulated by LINC01614-miR-520a-3p axis and affects osteosarcoma progression
PMID: 33753211
7
SNX3 plays a role in the EGF-SNX3-EGFR axis relevant to endocytosis and cancer
PMID: 37036745
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.50Moderate
Parkinson diseaseOpen Targets
0.46Moderate
Alzheimer diseaseOpen Targets
0.46Moderate
lysosomal storage diseaseOpen Targets
0.46Moderate
multiple sclerosisOpen Targets
0.46Moderate
cervical carcinomaOpen Targets
0.28Weak
colorectal carcinomaOpen Targets
0.08Suggestive
PhlebitisOpen Targets
0.08Suggestive
ThrombophlebitisOpen Targets
0.08Suggestive
cardiomyopathyOpen Targets
0.07Suggestive
pemphigus foliaceusOpen Targets
0.07Suggestive
secondary malignant neoplasmOpen Targets
0.06Suggestive
Adult-onset autosomal recessive sideroblastic anemiaOpen Targets
0.06Suggestive
dehydrated hereditary stomatocytosisOpen Targets
0.05Suggestive
microcytic anemia with liver iron overloadOpen Targets
0.04Suggestive
hemoglobin D diseaseOpen Targets
0.04Suggestive
Benign Thyroid Gland NeoplasmOpen Targets
0.04Suggestive
hemoglobin E diseaseOpen Targets
0.04Suggestive
Blackfan-Diamond anemiaOpen Targets
0.04Suggestive
pulmonary fibrosisOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
VPS26BProtein interaction96%SNX27Protein interaction91%WLSProtein interaction91%TBC1D5Protein interaction90%RAB7AProtein interaction87%SNX2Protein interaction85%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
Click a node to explore
SNX3VPS26BSNX27WLSTBC1D5RAB7ASNX2
PROTEIN STRUCTURE
Preparing viewer…
PDB2YPS · 2.60 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.52Moderately Constrained
pLIⓘ
0.93Intolerant
Observed/Expected LoF0.11 [0.04–0.52]
RankingsWhere SNX3 stands among ~20K protein-coding genes
  • #4,909of 20,598
    Most Researched98 · top quartile
  • #3,180of 17,882
    Most Constrained (LOEUF)0.52 · top quartile
Genes detectedSNX3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Honokiol enhances the sensitivity of cetuximab in KRAS
PMID: 39310106
Theranostics · 2024
1.00
2
EGFR endocytosis: more than meets the eye.
PMID: 37036745
Oncotarget · 2023
0.90
3
EGF-SNX3-EGFR axis drives tumor progression and metastasis in triple-negative breast cancers.
PMID: 34718348
Oncogene · 2022
0.80
4
Imbalance of NRG1-ERBB2/3 signalling underlies altered myelination in Charcot-Marie-Tooth disease 4H.
PMID: 36314052
Brain · 2023
0.70
5
PMID: 33214242
Development · 2020
0.60