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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SNX9
sorting nexin 9
Chromosome 6 · 6q25.3
NCBI Gene: 51429Ensembl: ENSG00000130340.18HGNC: HGNC:14973UniProt: Q9Y5X1
148PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
cytoplasmtrans-Golgi networkprotein binding1-phosphatidylinositol bindingmale infertilityAbnormal nasolacrimal system morphologyinjuryresponse to beta blocker
✦AI Summary

SNX9 is a multifunctional membrane-binding scaffold protein that orchestrates endocytic trafficking and membrane remodeling through coordinated protein-protein and lipid interactions. Structurally, SNX9 contains BAR-PX domains that bind phosphatidylinositol lipids (particularly PI(4,5)P2) and an SH3 domain that recruits dynamin and N-WASP to endocytic sites 1. Mechanistically, SNX9 stimulates dynamin GTPase activity and oligomerization while activating Arp2/3 complex-mediated actin polymerization, enabling both clathrin-dependent and clathrin-independent endocytosis 2. Beyond classical endocytosis, SNX9 mediates mitochondrial-derived vesicle (MDV) biogenesis through post-translational modifications; β-hydroxybutyrylation of SNX9 enhances MDV formation and mitochondrial homeostasis 3, while SNX9-dependent MDVs selectively transport undamaged mitochondrial proteins to extracellular vesicles, preventing inflammatory DAMP release 4. SNX9 also regulates fumarate-induced mtDNA release and innate immune activation via MDV-dependent pathways 5. Clinically, SNX9 inhibition alleviates CD8 T cell exhaustion and enhances anti-tumor immunity 6, while SNX9-targeting improves wound healing in diabetic models by reducing MDV-induced oxidative stress 7. These findings establish SNX9 as a critical node linking metabolism, vesicular trafficking, immune function, and disease pathogenesis.

Sources cited
1
β-hydroxybutyrylation of SNX9 facilitates mitochondrial-derived vesicle biogenesis and improves mitochondrial functions
PMID: 40118051
2
SNX9-dependent mitochondrial-derived vesicles mediate fumarate-induced mtDNA release and innate immune activation
PMID: 36890229
3
SNX9 deletion in CD8 T cells prevents T cell exhaustion and enhances anti-tumor immunotherapy efficacy
PMID: 36732507
4
SNX9 inhibition rescues diabetic foot ulcer progression by reducing mitochondrial-derived vesicle-induced oxidative stress
PMID: 39835574
5
SNX9-dependent MDVs selectively target non-oxidized mitochondrial proteins to extracellular vesicles while preventing DAMP release
PMID: 33785738
6
SNX9 BAR-PX domains bind PI(4,5)P2 and PI(3)P; SH3 domain interacts with dynamin and N-WASP to stimulate Arp2/3-mediated actin polymerization
PMID: 40105919
7
SNX9 recruits dynamin, stimulates its GTPase activity, and activates N-WASP-mediated actin polymerization during endocytosis
PMID: 19092055
8
SNX9 functions as a multifunctional scaffold coordinating membrane trafficking with actin dynamics in endocytosis, cell invasion, and division
PMID: 27989654
Disease Associationsⓘ20
male infertilityOpen Targets
0.31Weak
Abnormal nasolacrimal system morphologyOpen Targets
0.27Weak
injuryOpen Targets
0.27Weak
response to beta blockerOpen Targets
0.26Weak
hypertrophic cardiomyopathyOpen Targets
0.25Weak
irritable bowel syndromeOpen Targets
0.23Weak
cervical carcinomaOpen Targets
0.17Weak
neoplasmOpen Targets
0.09Suggestive
colorectal cancerOpen Targets
0.07Suggestive
Autosomal dominant polycystic kidney diseaseOpen Targets
0.07Suggestive
COVID-19Open Targets
0.05Suggestive
severe acute respiratory syndromeOpen Targets
0.05Suggestive
cancerOpen Targets
0.05Suggestive
lung adenocarcinomaOpen Targets
0.03Suggestive
IGA glomerulonephritisOpen Targets
0.02Suggestive
colorectal carcinomaOpen Targets
0.02Suggestive
infectionOpen Targets
0.02Suggestive
Renal cystOpen Targets
0.02Suggestive
metastatic melanomaOpen Targets
0.02Suggestive
congenital anomaly of cardiovascular systemOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
ITSN1Protein interaction100%PIK3R1Protein interaction100%ADAM15Protein interaction99%AMPHProtein interaction97%BIN1Protein interaction97%DNM2Protein interaction97%
Tissue Expression6 tissues
Bone Marrow
100%
Heart
85%
Liver
74%
Ovary
62%
Lung
47%
Brain
36%
Gene Interaction Network
Click a node to explore
SNX9ITSN1PIK3R1ADAM15AMPHBIN1DNM2
PROTEIN STRUCTURE
Preparing viewer…
PDB3DYT · 2.08 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.67LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.51 [0.40–0.67]
RankingsWhere SNX9 stands among ~20K protein-coding genes
  • #3,072of 20,598
    Most Researched148 · top quartile
  • #4,969of 17,882
    Most Constrained (LOEUF)0.67
Genes detectedSNX9
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
β-hydroxybutyrate facilitates mitochondrial-derived vesicle biogenesis and improves mitochondrial functions.
PMID: 40118051
Mol Cell · 2025
1.00
2
Fumarate induces vesicular release of mtDNA to drive innate immunity.
PMID: 36890229
Nature · 2023
0.90
3
Deletion of SNX9 alleviates CD8 T cell exhaustion for effective cellular cancer immunotherapy.
PMID: 36732507
Nat Commun · 2023
0.80
4
Extracellular Mitochondrial-Derived Vesicles Affect the Progression of Diabetic Foot Ulcer by Regulating Oxidative Stress and Mitochondrial Dysfunction.
PMID: 39835574
Adv Sci (Weinh) · 2025
0.70
5
Selective packaging of mitochondrial proteins into extracellular vesicles prevents the release of mitochondrial DAMPs.
PMID: 33785738
Nat Commun · 2021
0.60