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GeneE
27 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SPTBN1
spectrin beta, non-erythrocytic 1
Chromosome 2 · 2p16.2
NCBI Gene: 6711Ensembl: ENSG00000115306.18HGNC: HGNC:11275UniProt: B2ZZ89
314PubMed Papers
21Diseases
0Drugs
59Pathogenic Variants
FUNCTIONAL ROLE
Highly Constrained
RESEARCH IMPACT
TrendingVariant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
mitotic cytokinesisstructural constituent of cytoskeletonprotein bindingankyrin bindingdevelopmental delay, impaired speech, and behavioral abnormalitiescancergenetic disorderAbnormality of the skeletal system
✦AI Summary

SPTBN1 encodes βII-spectrin, a ubiquitously expressed cytoskeletal protein that forms micrometer-scale networks associated with plasma membranes and plays critical roles in central nervous system development and function 1. The protein functions as a structural component of the cytoskeleton and serves as an adapter protein for transforming growth factor-β (TGF-β) signaling, facilitating Smad3/Smad4 complex formation 2. βII-spectrin is essential for proper cytoskeleton organization and dynamics, membrane protein localization, and cellular scaffolding 3. Pathogenic heterozygous SPTBN1 variants cause an autosomal dominant neurodevelopmental syndrome characterized by developmental delays, intellectual disability, autistic features, seizures, and behavioral abnormalities 13. These variants lead to haploinsufficiency effects that compromise βII-spectrin stability and disrupt binding to molecular partners 1. Beyond neurodevelopment, SPTBN1 acts as a tumor suppressor in hepatocellular carcinoma by stabilizing SOCS1 and downregulating inflammatory responses 4. The protein also regulates metabolic processes, with therapeutic targeting showing promise for treating diet-induced liver disease and preventing cancer development 56. These findings establish SPTBN1 as a multifunctional protein critical for neurological development and cellular homeostasis.

Sources cited
1
SPTBN1 encodes βII-spectrin forming plasma membrane networks; pathogenic variants cause autosomal dominant neurodevelopmental syndrome with developmental delays and behavioral abnormalities
PMID: 34211179
2
Heterozygous SPTBN1 variants cause intellectual disability and autism through haploinsufficiency mechanism; protein functions in cytoskeletal scaffolding
PMID: 33847457
3
SPTBN1 acts as tumor suppressor in hepatocellular carcinoma by stabilizing SOCS1 and downregulating inflammatory responses
PMID: 33754058
4
SPTBN1 functions as TGF-β signal transducing adapter protein necessary for Smad3/Smad4 complex formation
PMID: 31206681
5
SPTBN1 represents potential therapeutic target for diet-induced liver disease and cancer prevention
PMID: 34910547
6
SPTBN1 is critical regulator of toxic aldehyde-induced metabolic dysfunction and potential therapeutic target
PMID: 39217614
Disease Associationsⓘ21
developmental delay, impaired speech, and behavioral abnormalitiesOpen Targets
0.80Strong
cancerOpen Targets
0.60Moderate
genetic disorderOpen Targets
0.52Moderate
Abnormality of the skeletal systemOpen Targets
0.47Moderate
Neurodevelopmental disorderOpen Targets
0.45Moderate
hearing lossOpen Targets
0.45Moderate
open-angle glaucomaOpen Targets
0.39Weak
bone fractureOpen Targets
0.39Weak
age-related hearing impairmentOpen Targets
0.39Weak
developmental disorder of mental healthOpen Targets
0.37Weak
complex neurodevelopmental disorderOpen Targets
0.37Weak
autosomal recessive non-syndromic intellectual disabilityOpen Targets
0.34Weak
intellectual disability, autosomal recessive 53Open Targets
0.34Weak
pervasive developmental disorderOpen Targets
0.34Weak
Rare pervasive developmental disorderOpen Targets
0.34Weak
Sensorineural hearing impairmentOpen Targets
0.33Weak
ovarian dysfunctionOpen Targets
0.33Weak
glaucomaOpen Targets
0.32Weak
bone diseaseOpen Targets
0.31Weak
Inguinal herniaOpen Targets
0.30Weak
Developmental delay, impaired speech, and behavioral abnormalitiesUniProt
Pathogenic Variants59
NM_003128.3(SPTBN1):c.5233C>T (p.Arg1745Ter)Pathogenic
not provided|Developmental delay, impaired speech, and behavioral abnormalities
★★☆☆2025→ Residue 1745
NM_003128.3(SPTBN1):c.3256G>A (p.Ala1086Thr)Pathogenic
SPTBN1-related neurodevelopmental disease|not provided
★★☆☆2025→ Residue 1086
NM_003128.3(SPTBN1):c.5730_5731del (p.Asp1912fs)Pathogenic
not provided|Inborn genetic diseases|Developmental delay, impaired speech, and behavioral abnormalities
★★☆☆2024→ Residue 1912
NM_003128.3(SPTBN1):c.3909C>G (p.Tyr1303Ter)Pathogenic
Developmental delay, impaired speech, and behavioral abnormalities|not provided
★★☆☆2023→ Residue 1303
NM_003128.3(SPTBN1):c.326G>A (p.Arg109His)Likely pathogenic
Developmental delay, impaired speech, and behavioral abnormalities
★☆☆☆2026→ Residue 109
NM_003128.3(SPTBN1):c.3854_3855del (p.Gln1285fs)Pathogenic
Developmental delay, impaired speech, and behavioral abnormalities
★☆☆☆2026→ Residue 1285
NM_003128.3(SPTBN1):c.6376C>T (p.Gln2126Ter)Pathogenic
not provided
★☆☆☆2025→ Residue 2126
NM_003128.3(SPTBN1):c.2012C>A (p.Thr671Asn)Likely pathogenic
Developmental delay, impaired speech, and behavioral abnormalities
★☆☆☆2025→ Residue 671
NM_003128.3(SPTBN1):c.3160C>T (p.Arg1054Ter)Likely pathogenic
Developmental delay, impaired speech, and behavioral abnormalities
★☆☆☆2025→ Residue 1054
NM_003128.3(SPTBN1):c.2138del (p.Glu713fs)Pathogenic
not provided
★☆☆☆2025→ Residue 713
NM_003128.3(SPTBN1):c.3564+1G>ALikely pathogenic
Inborn genetic diseases
★☆☆☆2025
NM_003128.3(SPTBN1):c.1231C>T (p.Arg411Trp)Likely pathogenic
not provided
★☆☆☆2025→ Residue 411
NM_003128.3(SPTBN1):c.471C>G (p.Phe157Leu)Likely pathogenic
Developmental delay, impaired speech, and behavioral abnormalities
★☆☆☆2025→ Residue 157
NM_003128.3(SPTBN1):c.190G>T (p.Val64Phe)Likely pathogenic
Developmental delay, impaired speech, and behavioral abnormalities
★☆☆☆2025→ Residue 64
NM_003128.3(SPTBN1):c.752T>C (p.Leu251Ser)Likely pathogenic
not provided
★☆☆☆2025→ Residue 251
NM_003128.3(SPTBN1):c.6277G>T (p.Glu2093Ter)Likely pathogenic
not provided
★☆☆☆2025→ Residue 2093
NM_003128.3(SPTBN1):c.3564+1G>CLikely pathogenic
not provided
★☆☆☆2025
NM_003128.3(SPTBN1):c.4495-2A>TLikely pathogenic
not provided
★☆☆☆2025
NM_003128.3(SPTBN1):c.6353_6356+15delLikely pathogenic
Developmental delay, impaired speech, and behavioral abnormalities
★☆☆☆2024
NM_003128.3(SPTBN1):c.475-1G>ALikely pathogenic
Developmental delay, impaired speech, and behavioral abnormalities
★☆☆☆2024
View on ClinVar ↗
Related Genes
NFASCProtein interaction100%NRCAMProtein interaction97%SPTA1Protein interaction97%SPTBProtein interaction97%SPTBN5Protein interaction96%NF2Protein interaction88%
Tissue Expression6 tissues
Heart
100%
Bone Marrow
61%
Lung
60%
Brain
53%
Liver
34%
Ovary
33%
Gene Interaction Network
Click a node to explore
SPTBN1NFASCNRCAMSPTA1SPTBSPTBN5NF2
PROTEIN STRUCTURE
Preparing viewer…
PDB1BKR · 1.10 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.16Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.12 [0.09–0.16]
RankingsWhere SPTBN1 stands among ~20K protein-coding genes
  • #1,082of 20,598
    Most Researched314 · top 10%
  • #1,181of 5,498
    Most Pathogenic Variants59 · top quartile
  • #247of 17,882
    Most Constrained (LOEUF)0.16 · top 5%
Genes detectedSPTBN1
Sources retrieved27 papers
Response time—
📄 Sources
27▼
1
Pathogenic SPTBN1 variants cause an autosomal dominant neurodevelopmental syndrome.
PMID: 34211179
Nat Genet · 2021
1.00
2
Heterozygous variants in SPTBN1 cause intellectual disability and autism.
PMID: 33847457
Am J Med Genet A · 2021
0.90
3
Genome Sequencing of Idiopathic Speech Delay.
PMID: 40225914
Hum Mutat · 2024
0.84
4
SPTBN1 inhibits inflammatory responses and hepatocarcinogenesis via the stabilization of SOCS1 and downregulation of p65 in hepatocellular carcinoma.
PMID: 33754058
Theranostics · 2021
0.80
5
Human atherosclerotic plaque transcriptomics reveals endothelial beta-2 spectrin as a potential regulator a leaky plaque microvasculature phenotype.
PMID: 38780883
Angiogenesis · 2024
0.76