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GeneE
3 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
SS18L2
SS18 like 2
Chromosome 3 Β· 3p22.1
NCBI Gene: 51188Ensembl: ENSG00000008324.13HGNC: HGNC:15593UniProt: Q9UHA2
18PubMed Papers
15Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingtriple-negative breast cancerAbnormality of the skeletal systemsynovial sarcomaneoplasm
✦AI Summary

SS18L2 is an epigenetic modifier protein that functions as a transcriptional co-activator through protein-protein interactions 1. The protein contains an SNH domain that serves as a major interface for interactions with various proteins involved in gene regulation 1. SS18L2 can functionally substitute for its paralog SS18 in protein-protein interactions, indicating functional conservation within the SS18 protein family 1. The gene is composed of three exons and maps to chromosome 3, representing a smaller structure compared to related SS18 family members 2. In cancer biology, SS18L2 functions as an essential regulator of cell fitness; CRISPR/Cas9 screening identified SS18L2 as a growth-regulatory epigenetic modifier in triple-negative breast cancer (TNBC) cells, demonstrating its importance for cancer cell survival under both in vitro and in vivo conditions 3. These findings suggest SS18L2 represents a potential therapeutic target in epigenetically-driven cancers, particularly TNBC. The SS18L2 locus likely originated from an earlier genomic duplication event in the vertebrate lineage, distinguishing it from the more recent duplication giving rise to SS18 and SS18L1 1.

Sources cited
1
SS18L2 is essential for TNBC cell fitness and was identified as a cancer-specific epigenetic vulnerability through CRISPR screening
PMID: 35973998
2
SS18L2 gene structure (three exons), chromosomal location (3p21), and comparison with SS18 and SS18L1 genes
PMID: 11435705
3
SS18L2 functions as transcriptional co-activator with SNH domain for protein interactions and can functionally replace SS18; originated from earlier vertebrate duplication event
PMID: 16484776
⚠Limited data available β€” This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜15
triple-negative breast cancerOpen Targets
0.04Suggestive
Abnormality of the skeletal systemOpen Targets
0.04Suggestive
synovial sarcomaOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
cancerOpen Targets
0.01Suggestive
non-small cell lung carcinomaOpen Targets
0.00Suggestive
multiple myelomaOpen Targets
0.00Suggestive
infectionOpen Targets
0.00Suggestive
macroglobulinemiaOpen Targets
0.00Suggestive
gastric cancerOpen Targets
0.00Suggestive
hepatocellular carcinomaOpen Targets
0.00Suggestive
Hereditary breast cancerOpen Targets
0.00Suggestive
hereditary breast carcinomaOpen Targets
0.00Suggestive
lymphomaOpen Targets
0.00Suggestive
melanomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar β†—
Related Genes
SSX2BProtein interaction78%SSX4BProtein interaction75%SSX2Protein interaction72%SSX4Protein interaction72%CRAMP1Protein interaction70%
Tissue Expression6 tissues
Bone Marrow
100%
Liver
56%
Brain
53%
Lung
38%
Ovary
36%
Heart
31%
Gene Interaction Network
Click a node to explore
SS18L2SSX2BSSX4BSSX2SSX4CRAMP1
PROTEIN STRUCTURE
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AlphaFoldAI-predicted Β· UniProt Q9UHA2
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.40LoF Tolerant
pLIβ“˜
0.04Tolerant
Observed/Expected LoF0.67 [0.35–1.40]
RankingsWhere SS18L2 stands among ~20K protein-coding genes
  • #14,818of 20,598
    Most Researched18
  • #14,528of 17,882
    Most Constrained (LOEUF)1.40
Genes detectedSS18L2
Sources retrieved3 papers
Response timeβ€”
πŸ“„ Sources
3
1
EPIKOL, a chromatin-focused CRISPR/Cas9-based screening platform, to identify cancer-specific epigenetic vulnerabilities.
PMID: 35973998
Cell Death Dis Β· 2022
1.00
2
Mapping and characterization of the mouse and human SS18 genes, two human SS18-like genes and a mouse Ss18 pseudogene.
PMID: 11435705
Cytogenet Cell Genet Β· 2001
0.67
3
Common origin of the human synovial sarcoma associated SS18 and SS18L1 gene loci.
PMID: 16484776
Cytogenet Genome Res Β· 2006
0.33