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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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STX12
syntaxin 12
Chromosome 1 · 1p35.3
NCBI Gene: 23673Ensembl: ENSG00000117758.15HGNC: HGNC:11430UniProt: Q86Y82
102PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub GeneTransporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein stabilizationSNARE complexprotein bindingcholesterol effluxneurodegenerative diseaseschizophreniahepatocellular carcinomatype 2 diabetes mellitus
✦AI Summary

STX12 (syntaxin 12) is a SNARE protein that mediates vesicle fusion at endosomal compartments. As a Qa-SNARE, STX12 promotes movement of transport vesicles from endosomes to the cell membrane, functioning in the endocytic recycling pathway 1. STX12 associates with VPS16B/VPS33B complexes to facilitate α-granule biogenesis in megakaryocytes through endosomal trafficking 1. The protein regulates intracellular AMPAR trafficking through complex formation with GRIP1, GRIA2, and NSG1, controlling endosomal sorting toward recycling and membrane targeting. STX12 is phosphorylated by SGK3 kinase at Ser139, enhancing its interaction with VAMP4/VTI1A/STX6-containing SNARE complexes and promoting plasma membrane localization 2. The protein functions in autophagy regulation; miR-31 suppresses STX12 expression, inhibiting autophagic flux in colorectal cancer cells 3. STX12 mRNA is stabilized by splicing factor SF3A1, and this stabilization confers apoptosis resistance in colorectal cancer cells 4. Clinically, elevated STX12 expression correlates with colorectal cancer progression and poor apoptotic responses 4. STX12 serves as a genetic biomarker for intrahepatic cholangiocarcinoma risk 5 and is implicated in obesity-associated autophagy dysfunction in mesenchymal stromal cells 6. In neuronal development, STX12 contributes to postnatal age-dependent brain functional maturation 7, while the schizophrenia-linked protein tSNARE1 can compete with STX12 for SNARE complex incorporation, suggesting regulatory mechanisms in psychiatric conditions 8.

Sources cited
1
STX12 associates with VPS16B/VPS33B and mediates vesicle fusion at endosomes in α-granule biogenesis
PMID: 34905616
2
SGK3 phosphorylates STX12 at Ser139, enhancing SNARE complex interaction and plasma membrane localization
PMID: 31665227
3
miR-31 inhibits STX12 expression, suppressing autophagic flux in colorectal cancer cells
PMID: 37216106
4
SF3A1 stabilizes STX12 mRNA to promote apoptosis resistance in colorectal cancer cells
PMID: 41683622
5
STX12 is identified as a genetic biomarker for intrahepatic cholangiocarcinoma risk
PMID: 40240670
6
STX12 is implicated in obesity-associated autophagy dysfunction in adipose-derived mesenchymal stromal cells
PMID: 40116436
7
STX12 is involved in synaptic vesicle transportation and age-dependent brain functional development
PMID: 38852805
8
tSNARE1 can compete with STX12 for incorporation into endosomal SNARE complexes
PMID: 34642214
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.48Moderate
schizophreniaOpen Targets
0.15Weak
hepatocellular carcinomaOpen Targets
0.04Suggestive
type 2 diabetes mellitusOpen Targets
0.03Suggestive
heart failureOpen Targets
0.03Suggestive
neoplasmOpen Targets
0.03Suggestive
infectionOpen Targets
0.03Suggestive
melanomaOpen Targets
0.02Suggestive
colorectal carcinomaOpen Targets
0.02Suggestive
cardiac hypertrophyOpen Targets
0.01Suggestive
colorectal cancerOpen Targets
0.01Suggestive
neuroblastomaOpen Targets
0.01Suggestive
liver cancerOpen Targets
0.01Suggestive
ovarian carcinomaOpen Targets
0.01Suggestive
cardiomyopathyOpen Targets
0.01Suggestive
gastric cancerOpen Targets
0.01Suggestive
cancerOpen Targets
0.01Suggestive
obesityOpen Targets
0.01Suggestive
Lewy body dementiaOpen Targets
0.00Suggestive
intrahepatic cholangiocarcinomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
VPS11Protein interaction100%VPS41Protein interaction100%VPS16Protein interaction100%VTI1AProtein interaction100%VPS33BProtein interaction100%BNIP1Protein interaction99%
Tissue Expression6 tissues
Brain
100%
Lung
68%
Heart
36%
Ovary
28%
Liver
23%
Bone Marrow
18%
Gene Interaction Network
Click a node to explore
STX12VPS11VPS41VPS16VTI1AVPS33BBNIP1
PROTEIN STRUCTURE
Preparing viewer…
PDB2DNX · NMR
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.57Moderately Constrained
pLIⓘ
0.88Intermediate
Observed/Expected LoF0.33 [0.20–0.57]
RankingsWhere STX12 stands among ~20K protein-coding genes
  • #4,696of 20,598
    Most Researched102 · top quartile
  • #3,737of 17,882
    Most Constrained (LOEUF)0.57 · top quartile
Genes detectedSTX12
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Splicing Factor 3a Subunit 1 Promotes Colorectal Cancer Growth via Anti-Apoptotic Effects of Syntaxin12.
PMID: 41683622
Int J Mol Sci · 2026
1.00
2
Syntaxin 12 and COMMD3 are new factors that function with VPS33B in the biogenesis of platelet α-granules.
PMID: 34905616
Blood · 2022
0.90
3
MicroRNA-31 induced by
PMID: 37216106
iScience · 2023
0.80
4
Schizophrenia-Linked Protein tSNARE1 Regulates Endosomal Trafficking in Cortical Neurons.
PMID: 34642214
J Neurosci · 2021
0.70
5
Identification of Novel Protein Biomarkers for Intrahepatic Cholangiocarcinoma by Integrating Human Plasma Proteome with Genome.
PMID: 40240670
J Gastrointest Cancer · 2025
0.60