HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
SUFU
SUFU negative regulator of hedgehog signaling
Chromosome 10 Β· 10q24.32
NCBI Gene: 51684Ensembl: ENSG00000107882.13HGNC: HGNC:16466UniProt: A0A223LX15
128PubMed Papers
23Diseases
0Drugs
129Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedTumor Suppressor
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
nucleusnegative regulation of smoothened signaling pathwaynucleoplasmnegative regulation of transcription by RNA polymerase IImedulloblastomanevoid basal cell carcinoma syndromeJoubert syndrome 32familial meningioma
✦AI Summary

SUFU is a critical negative regulator of hedgehog/smoothened signaling that suppresses GLI transcription factor activity through multiple mechanisms 1. SUFU down-regulates GLI1 and GLI2-mediated transactivation of target genes and may link GLI1 to proteasomal degradation via BTRC 1. A key mechanism involves cytoplasmic sequestration of GLI proteins (GLI1, GLI2, GLI3), which is overcome when STK36 binds to both SUFU and GLI proteins 1. In the absence of hedgehog signaling, SUFU-GLI3 complexes are recruited to cilia, promoting processing of full-length GLI3 into the repressor form (GLI3R) 1. Upon hedgehog activation, SUFU dissociates from GLI3, allowing nuclear translocation and conversion to the activator form (GLI3A) 1. SUFU dysfunction is implicated in multiple human diseases. Loss-of-function SUFU mutations cause basal cell nevus syndrome and Joubert syndrome, while aberrant hedgehog pathway activation through SUFU dysregulation is associated with medulloblastoma and other cancers 2 3. The pathway can be activated in cancer through ligand-independent mechanisms that bypass upstream signaling components 1. Understanding SUFU's regulatory role is essential for developing targeted therapies against hedgehog-driven malignancies.

Sources cited
1
SUFU negatively regulates hedgehog/GLI signaling; down-regulates GLI1 and GLI2 transactivation; sequesters GLI proteins in cytoplasm; links GLI1 to BTRC for proteasomal degradation; regulates GLI3 processing into repressor vs. activator forms
PMID: 34298625
2
Medulloblastoma is associated with sonic hedgehog (SHH) subgroup, which involves dysregulation of hedgehog pathway signaling
PMID: 31574483
3
SUFU (Suppressor of fused homolog) is a component of the hedgehog signaling pathway; hedgehog pathway deregulation is associated with developmental anomalies and multiple cancers including basal cell carcinoma, medulloblastoma, and pancreatic cancer; aberrant pathway activation occurs through ligand-independent mechanisms
PMID: 29274272
⚠Limited data available β€” This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜23
medulloblastomaOpen Targets
0.80Strong
nevoid basal cell carcinoma syndromeOpen Targets
0.78Strong
Joubert syndrome 32Open Targets
0.73Strong
familial meningiomaOpen Targets
0.65Moderate
Joubert syndromeOpen Targets
0.60Moderate
hereditary neoplastic syndromeOpen Targets
0.55Moderate
Inherited cancer-predisposing syndromeOpen Targets
0.55Moderate
meningiomaOpen Targets
0.44Moderate
skin basal cell carcinomaOpen Targets
0.38Weak
esophageal adenocarcinomaOpen Targets
0.37Weak
Atypical MeningiomaOpen Targets
0.37Weak
bile duct carcinomaOpen Targets
0.37Weak
carcinoma of liver and intrahepatic biliary tractOpen Targets
0.37Weak
hemangioblastomaOpen Targets
0.37Weak
lung carcinomaOpen Targets
0.37Weak
Meningothelial MeningiomaOpen Targets
0.37Weak
neurodegenerative diseaseOpen Targets
0.37Weak
nodular melanomaOpen Targets
0.37Weak
Ovarian Endometrioid Adenocarcinoma with Squamous DifferentiationOpen Targets
0.37Weak
skin carcinomaOpen Targets
0.37Weak
Basal cell nevus syndrome 2UniProt
Joubert syndrome 32UniProt
MedulloblastomaUniProt
Pathogenic Variants129
NM_016169.4(SUFU):c.71dup (p.Ala25fs)Pathogenic
Medulloblastoma;Gorlin syndrome|Medulloblastoma|not provided|Hereditary cancer-predisposing syndrome|Basal cell nevus syndrome 2
β˜…β˜…β˜†β˜†2026β†’ Residue 25
NM_016169.4(SUFU):c.684-2A>GLikely pathogenic
Gorlin syndrome;Medulloblastoma|Basal cell nevus syndrome 2
β˜…β˜…β˜†β˜†2025
NM_016169.4(SUFU):c.1312del (p.Glu438fs)Pathogenic
not provided|Gorlin syndrome;Medulloblastoma|Hereditary cancer-predisposing syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 438
NM_016169.4(SUFU):c.1022+1G>APathogenic
not provided|Medulloblastoma;Gorlin syndrome|SUFU-related disorder|Medulloblastoma|Hereditary cancer-predisposing syndrome|Basal cell nevus syndrome 2
β˜…β˜…β˜†β˜†2025
NM_016169.4(SUFU):c.71del (p.Pro24fs)Pathogenic
Medulloblastoma;Gorlin syndrome|not provided|Hereditary cancer-predisposing syndrome|Medulloblastoma|Basal cell nevus syndrome 2
β˜…β˜…β˜†β˜†2025β†’ Residue 24
NM_016169.4(SUFU):c.436C>T (p.Arg146Ter)Pathogenic
Medulloblastoma;Gorlin syndrome|not provided|Hereditary cancer-predisposing syndrome|Basal cell nevus syndrome 2
β˜…β˜…β˜†β˜†2025β†’ Residue 146
NM_016169.4(SUFU):c.37_53del (p.Thr13fs)Pathogenic
Gorlin syndrome;Medulloblastoma|Gorlin syndrome|Basal cell nevus syndrome 2
β˜…β˜…β˜†β˜†2025β†’ Residue 13
NM_016169.4(SUFU):c.585_586dup (p.Thr196fs)Pathogenic
Gorlin syndrome;Medulloblastoma|Hereditary cancer-predisposing syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 196
NM_016169.4(SUFU):c.37_53dup (p.Gly19fs)Pathogenic
Gorlin syndrome;Medulloblastoma|Medulloblastoma|Hereditary cancer-predisposing syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 19
NM_016169.4(SUFU):c.895C>T (p.Arg299Ter)Pathogenic
Hereditary cancer-predisposing syndrome|Gorlin syndrome;Medulloblastoma|not provided|Basal cell nevus syndrome 2
β˜…β˜…β˜†β˜†2025β†’ Residue 299
NM_016169.4(SUFU):c.1018del (p.Ala340fs)Pathogenic
Gorlin syndrome;Medulloblastoma|Hereditary cancer-predisposing syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 340
NM_016169.4(SUFU):c.895_896insTGTGT (p.Arg299fs)Pathogenic
Gorlin syndrome;Medulloblastoma|Hereditary cancer-predisposing syndrome|SUFU-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 299
NM_016169.4(SUFU):c.1147_1150del (p.Leu383fs)Pathogenic
Gorlin syndrome|not provided|Basal cell nevus syndrome 2
β˜…β˜…β˜†β˜†2025β†’ Residue 383
NM_016169.4(SUFU):c.902_903del (p.Ser301fs)Pathogenic
not provided|Hereditary cancer-predisposing syndrome
β˜…β˜…β˜†β˜†2024β†’ Residue 301
NM_016169.4(SUFU):c.1023-2A>TLikely pathogenic
Medulloblastoma;Gorlin syndrome|Basal cell nevus syndrome 2;Joubert syndrome 32
β˜…β˜…β˜†β˜†2024
NM_016169.4(SUFU):c.683+1G>ALikely pathogenic
Gorlin syndrome;Medulloblastoma|not provided
β˜…β˜…β˜†β˜†2023
NM_016169.4(SUFU):c.897_898insAGGTGCCGGGCACACAGCCCCGGCGAAGAGTGTGCATCGGCACA (p.Leu300fs)Pathogenic
Hereditary cancer-predisposing syndrome|Gorlin syndrome;Medulloblastoma
β˜…β˜…β˜†β˜†2023β†’ Residue 300
NM_016169.4(SUFU):c.1022del (p.Pro341fs)Pathogenic
Hereditary cancer-predisposing syndrome|Gorlin syndrome;Medulloblastoma
β˜…β˜…β˜†β˜†2023β†’ Residue 341
NM_016169.4(SUFU):c.846dup (p.Glu283fs)Pathogenic
Gorlin syndrome;Medulloblastoma|Hereditary cancer-predisposing syndrome
β˜…β˜…β˜†β˜†2022β†’ Residue 283
NM_016169.4(SUFU):c.1123del (p.Gln375fs)Pathogenic
Medulloblastoma;Gorlin syndrome|Hereditary cancer-predisposing syndrome
β˜…β˜…β˜†β˜†2021β†’ Residue 375
View on ClinVar β†—
Related Genes
GLI1Protein interaction100%GLI2Protein interaction100%GLI3Protein interaction100%IHHProtein interaction100%PRKACAProtein interaction100%SHHProtein interaction100%
Tissue Expression6 tissues
Ovary
100%
Heart
89%
Lung
76%
Liver
71%
Brain
65%
Bone Marrow
26%
Gene Interaction Network
Click a node to explore
SUFUGLI1GLI2GLI3IHHPRKACASHH
PROTEIN STRUCTURE
Preparing viewer…
PDB4KMD Β· 1.70 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.21Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.11 [0.06–0.21]
RankingsWhere SUFU stands among ~20K protein-coding genes
  • #3,668of 20,598
    Most Researched128 Β· top quartile
  • #599of 5,498
    Most Pathogenic Variants129 Β· top quartile
  • #534of 17,882
    Most Constrained (LOEUF)0.21 Β· top 5%
Genes detectedSUFU
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Updates to Microhematuria: AUA/SUFU Guideline (2025).
PMID: 40013563
J Urol Β· 2025
1.00
2
Medulloblastoma in the age of molecular subgroups: a review.
PMID: 31574483
J Neurosurg Pediatr Β· 2019
0.90
3
Microhematuria: AUA/SUFU Guideline.
PMID: 32698717
J Urol Β· 2020
0.80
4
Hedgehog/GLI Signaling Pathway: Transduction, Regulation, and Implications for Disease.
PMID: 34298625
Cancers (Basel) Β· 2021
0.70
5
The role of the Hedgehog signaling pathway in cancer: A comprehensive review.
PMID: 29274272
Bosn J Basic Med Sci Β· 2018
0.60