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7 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SYCE3
synaptonemal complex central element protein 3
Chromosome 22 · 22q13.33
NCBI Gene: 644186Ensembl: ENSG00000217442.4HGNC: HGNC:35245UniProt: A1L190
15PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingsynaptonemal complex assemblyreciprocal meiotic recombinationspermatogenesisneurodegenerative diseasehearing lossazoospermiaalcohol drinking
✦AI Summary

SYCE3 is a major structural component of the synaptonemal complex (SC) central element, a supramolecular protein assembly essential for meiosis 1. Rather than simply stabilizing the SYCP1 protein lattice, SYCE3 actively remodels it by promoting SYCP1 conformational changes from tetramers to heterotrimers, disrupting the original lattice and establishing a new integrated SYCP1-SYCE3 lattice 1. This remodeling mechanism enables recruitment of other central element complexes (SYCE1-SIX6OS1 and SYCE2-TEX12) and promotes chromosome 22 between homologous chr22 1. Structurally, SYCE3 forms dimeric four-helical bundles that self-assemble through staggered lateral and end-on interactions into higher-order oligomers, favoring dodecamer formation 2. Functionally, SYCE3 is required downstream of SYCP1 but upstream of other central element proteins, enabling their chromosome 22 and initiating synapsis 3. SYCE3 knockout mice are infertile in both sexes due to meiotic arrest and complete absence of MLH1 foci (crossover markers), despite normal recombination initiation 3. Clinically, SYCE3 dysfunction impairs male fertility through spermatogenic arrest at meiotic prophase I 4. As a meiosis-specific protein, SYCE3 is essential for genome haploidization and sexual reproduction.

Sources cited
1
SYCE3 remodels SYCP1 lattice structures and recruits SYCE2-TEX12 and SYCE1-SIX6OS1 complexes during synaptonemal complex assembly
PMID: 36635604
2
SYCE3 is required for fertility, synapsis initiation, chromosome loading of central element proteins, and meiotic progression in both sexes
PMID: 21637789
3
SYCE3 forms dimeric four-helical bundle building blocks that self-assemble through lateral and end-on interactions into higher-order oligomers
PMID: 31023827
4
SYCE3 is a key gene regulating synapsis and meiotic progression; its dysfunction contributes to spermatogenic arrest at meiotic prophase I
PMID: 38958533
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.27Weak
hearing lossOpen Targets
0.10Weak
azoospermiaOpen Targets
0.08Suggestive
alcohol drinkingOpen Targets
0.08Suggestive
partial chromosome Y deletionOpen Targets
0.07Suggestive
primary ovarian insufficiencyOpen Targets
0.07Suggestive
spermatogenic failure 57Open Targets
0.06Suggestive
spermatogenic failure 50Open Targets
0.06Suggestive
spermatogenic failure 25Open Targets
0.06Suggestive
spinocerebellar ataxia type 32Open Targets
0.06Suggestive
46,XX testicular disorder of sex developmentOpen Targets
0.06Suggestive
46,XX gonadal dysgenesisOpen Targets
0.06Suggestive
isochromosomy YpOpen Targets
0.06Suggestive
spermatogenic failure, X-linked, 2Open Targets
0.06Suggestive
Isolated follicle stimulating hormone deficiencyOpen Targets
0.05Suggestive
spermatogenic failure 59Open Targets
0.05Suggestive
spermatogenic failure 60Open Targets
0.05Suggestive
spermatogenic failure 73Open Targets
0.05Suggestive
spermatogenic failure 74Open Targets
0.05Suggestive
spermatogenic failure 61Open Targets
0.05Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
REC8Protein interaction99%STAG3Protein interaction99%SMC1BProtein interaction99%HORMAD1Protein interaction99%C14orf39Protein interaction99%SYCP2Protein interaction92%
Tissue Expression6 tissues
Brain
100%
Liver
84%
Lung
8%
Bone Marrow
8%
Heart
0%
Ovary
0%
Gene Interaction Network
Click a node to explore
SYCE3REC8STAG3SMC1BHORMAD1C14orf39SYCP2
PROTEIN STRUCTURE
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PDB6H86 · 1.90 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.80LoF Tolerant
pLIⓘ
0.67Intermediate
Observed/Expected LoF0.25 [0.10–0.80]
RankingsWhere SYCE3 stands among ~20K protein-coding genes
  • #15,702of 20,598
    Most Researched15
  • #6,686of 17,882
    Most Constrained (LOEUF)0.80
Genes detectedSYCE3
Sources retrieved7 papers
Response time—
📄 Sources
7▼
1
HSF5 Deficiency Causes Male Infertility Involving Spermatogenic Arrest at Meiotic Prophase I in Humans and Mice.
PMID: 38958533
Adv Sci (Weinh) · 2024
1.00
2
Structural maturation of SYCP1-mediated meiotic chromosome synapsis by SYCE3.
PMID: 36635604
Nat Struct Mol Biol · 2023
0.86
3
A novel mouse synaptonemal complex protein is essential for loading of central element proteins, recombination, and fertility.
PMID: 21637789
PLoS Genet · 2011
0.71
4
Molecular structure of human synaptonemal complex protein SYCE1.
PMID: 30607510
Chromosoma · 2019
0.57
5
A molecular model for self-assembly of the synaptonemal complex protein SYCE3.
PMID: 31023827
J Biol Chem · 2019
0.43