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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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SYTL3
synaptotagmin like 3
Chromosome 6 · 6q25.3
NCBI Gene: 94120Ensembl: ENSG00000164674.18HGNC: HGNC:15587UniProt: B4E2A9
18PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingexocytosisneurexin family protein bindingplasma membranesynovium disorderstomatitismucositisCerebral degeneration
✦AI Summary

SYTL3 (synaptotagmin-like 3) functions as a Rab effector protein involved in vesicle trafficking and exocytosis, with particular relevance to neuronal migration and immune cell function. In neurodevelopment, SYTL3 acts as a regulator of cortical neuronal migration, where knockout accelerates migration through modulation of matrix metalloproteinases and affects presynaptic neurotransmitter release in human embryonic stem cell-derived neurons 1. The protein plays a critical role in exocytosis pathways, as demonstrated in bladder cancer where SYTL3 functions as a Rab27b effector to mediate bacterial exocytosis, with knockdown reducing BCG elimination from cells and enhancing therapeutic efficacy 2. SYTL3 also shows distinct expression patterns in immune cells, particularly in cardiac sarcoidosis where SYTL3+ macrophages are scattered throughout granulomas and exhibit mTOR pathway activation associated with proliferation 3. Additionally, SYTL3 expression is upregulated in response to IL-23 inhibition therapy in psoriatic patients 4 and has been associated with cancer cell secretome alterations in renal cell carcinoma 5. These findings collectively indicate SYTL3's multifaceted role in vesicle trafficking, neuronal development, immune responses, and disease pathogenesis.

Sources cited
1
SYTL3 regulates cortical neuronal migration during early neurodevelopment and affects presynaptic neurotransmitter release
PMID: 33657377
2
SYTL3 functions as a Rab27b effector mediating bacterial exocytosis in bladder cancer cells
PMID: 32737155
3
SYTL3+ macrophages are found scattered throughout granulomas in cardiac sarcoidosis with mTOR pathway activation
PMID: 36111531
4
SYTL3 is upregulated following IL-23 inhibition therapy in psoriatic patients
PMID: 40963613
5
SYTL3 is involved in protein trafficking and secretion changes in renal cell carcinoma
PMID: 36604669
Disease Associationsⓘ20
synovium disorderOpen Targets
0.32Weak
mucositisOpen Targets
0.31Weak
stomatitisOpen Targets
0.31Weak
Cerebral degenerationOpen Targets
0.29Weak
body weight gainOpen Targets
0.29Weak
hair colorOpen Targets
0.27Weak
tympanic membrane diseaseOpen Targets
0.26Weak
plasma fibronectin deficiencyOpen Targets
0.07Suggestive
ovarian neoplasmOpen Targets
0.07Suggestive
coronary artery diseaseOpen Targets
0.04Suggestive
cystic fibrosisOpen Targets
0.04Suggestive
congenital enteropathy due to enteropeptidase deficiencyOpen Targets
0.04Suggestive
gastric mucosal hypertrophyOpen Targets
0.04Suggestive
Hereditary persistence of alpha-fetoproteinOpen Targets
0.04Suggestive
ovarian dysfunctionOpen Targets
0.03Suggestive
open-angle glaucomaOpen Targets
0.03Suggestive
Congenital deficiency in alpha-fetoproteinOpen Targets
0.03Suggestive
BlindnessOpen Targets
0.03Suggestive
response to xenobiotic stimulusOpen Targets
0.03Suggestive
glaucomaOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
SYTL1Shared pathway100%SYTL5Shared pathway100%RAB27AProtein interaction85%RAB27BProtein interaction85%SYTL2Shared pathway50%SYCNShared pathway50%
Tissue Expression6 tissues
Lung
100%
Bone Marrow
51%
Heart
36%
Brain
18%
Ovary
13%
Liver
10%
Gene Interaction Network
Click a node to explore
SYTL3SYTL1SYTL5RAB27ARAB27BSYTL2SYCN
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q4VX76
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.34LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.10 [0.91–1.34]
RankingsWhere SYTL3 stands among ~20K protein-coding genes
  • #14,828of 20,598
    Most Researched18
  • #14,050of 17,882
    Most Constrained (LOEUF)1.34
Genes detectedSYTL3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Transcriptional and Immune Landscape of Cardiac Sarcoidosis.
PMID: 36111531
Circ Res · 2022
1.00
2
Transcriptional networks identify synaptotagmin-like 3 as a regulator of cortical neuronal migration during early neurodevelopment.
PMID: 33657377
Cell Rep · 2021
0.90
3
Coordinated reprogramming of renal cancer transcriptome, metabolome and secretome associates with immune tumor infiltration.
PMID: 36604669
Cancer Cell Int · 2023
0.80
4
Assessment of gene signatures following the inhibition of IL-23: a study to evaluate the mechanistic effects behind the clinical efficacy of guselkumab in patients with psoriatic arthritis.
PMID: 40963613
Front Immunol · 2025
0.70
5
Androgen Receptor Signaling Reduces the Efficacy of Bacillus Calmette-Guérin Therapy for Bladder Cancer via Modulating Rab27b-Induced Exocytosis.
PMID: 32737155
Mol Cancer Ther · 2020
0.60