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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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SYCN
syncollin
Chromosome 19 · 19q13.2
NCBI Gene: 342898Ensembl: ENSG00000179751.7HGNC: HGNC:18442UniProt: Q0VAF6
6PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingexocytosissecretory granule membranezymogen granule membraneHyperlipoproteinemia type 1bronchiectasischronic pancreatitisbronchiectasis with or without elevated sweat chloride 1
✦AI Summary

SYCN (syncollin) functions as a specific molecular chaperone in bacterial type III secretion systems, particularly in Yersinia species. SYCN forms a cytoplasmic complex with YscB that specifically binds to YopN, a key regulatory protein that controls Yop secretion 1. This SycN/YscB complex is essential for preventing premature secretion of virulence proteins in the presence of calcium and facilitating proper YopN translocation into host cells 2. The chaperone activity of SYCN requires both SycN and YscB proteins working together, as neither protein alone can effectively associate with YopN 1. SYCN is also required for the regulated secretion of YopN by overcoming negative regulatory signals that prevent entry into the type III secretion pathway 3. Beyond its bacterial role, SYCN has emerged as a potential biomarker for pancreatic cancer diagnosis, showing significant elevation in pancreatic ductal adenocarcinoma compared to healthy controls 4. When combined with CA19.9 and REG1B, SYCN demonstrates improved diagnostic performance for early-stage pancreatic cancer detection 4. Additionally, SYCN expression has been identified in transcriptomic analyses of grass carp growth regulation and pancreatic cancer prognosis 56.

Sources cited
1
SYCN forms a complex with YscB that functions as a specific chaperone for YopN in Yersinia pestis
PMID: 10094626
2
SYCN is required for proper YopN translocation into eukaryotic cells and preventing premature Yop secretion
PMID: 12535078
3
SYCN facilitates YopN entry into the type III secretion pathway by overcoming negative regulatory signals
PMID: 11514512
4
SYCN is significantly elevated in pancreatic cancer and improves diagnostic performance when combined with other biomarkers
PMID: 24007603
5
SYCN expression is associated with growth regulation in grass carp
PMID: 37714387
6
SYCN is identified as a hub gene in pancreatic cancer diagnostic signatures
PMID: 31706267
Disease Associationsⓘ20
Hyperlipoproteinemia type 1Open Targets
0.06Suggestive
bronchiectasisOpen Targets
0.05Suggestive
chronic pancreatitisOpen Targets
0.05Suggestive
bronchiectasis with or without elevated sweat chloride 1Open Targets
0.04Suggestive
hereditary chronic pancreatitisOpen Targets
0.04Suggestive
bronchiectasis with or without elevated sweat chloride 2Open Targets
0.04Suggestive
GCGR-related hyperglucagonemiaOpen Targets
0.04Suggestive
hyperinsulinemic hypoglycemia, familial, 2Open Targets
0.04Suggestive
gallbladder diseaseOpen Targets
0.03Suggestive
gallbladder disease 1Open Targets
0.03Suggestive
pancreatic agenesis 2Open Targets
0.03Suggestive
Partial pancreatic agenesisOpen Targets
0.03Suggestive
benign recurrent intrahepatic cholestasis type 1Open Targets
0.03Suggestive
Soft Tissue NeoplasmOpen Targets
0.02Suggestive
polymyalgia rheumaticaOpen Targets
0.02Suggestive
liver neoplasmOpen Targets
0.02Suggestive
liver cancerOpen Targets
0.02Suggestive
ovarian mucinous adenocarcinomaOpen Targets
0.02Suggestive
cancerOpen Targets
0.01Suggestive
pancreatic ductal adenocarcinomaOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
TNFAIP2Shared pathway100%EXOC3L2Shared pathway100%EXOC3L4Shared pathway100%EXOC3L1Shared pathway100%ZG16Protein interaction76%CLPSProtein interaction75%
Tissue Expression6 tissues
Liver
100%
Ovary
55%
Lung
12%
Brain
0%
Heart
0%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
SYCNTNFAIP2EXOC3L2EXOC3L4EXOC3L1ZG16CLPS
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q0VAF6
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.81LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.26 [0.85–1.81]
RankingsWhere SYCN stands among ~20K protein-coding genes
  • #18,220of 20,598
    Most Researched6
  • #16,634of 17,882
    Most Constrained (LOEUF)1.81
Genes detectedSYCN
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Selection and characterization of Yersinia pestis YopN mutants that constitutively block Yop secretion.
PMID: 16091038
Mol Microbiol · 2005
1.00
2
Validation of four candidate pancreatic cancer serological biomarkers that improve the performance of CA19.9.
PMID: 24007603
BMC Cancer · 2013
0.90
3
Translocation of YopE and YopN into eukaryotic cells by Yersinia pestis yopN, tyeA, sycN, yscB and lcrG deletion mutants measured using a phosphorylatable peptide tag and phosphospecific antibodies.
PMID: 12535078
Mol Microbiol · 2003
0.80
4
A complex composed of SycN and YscB functions as a specific chaperone for YopN in Yersinia pestis.
PMID: 10094626
Mol Microbiol · 1998
0.70
5
Regulated secretion of YopN by the type III machinery of Yersinia enterocolitica.
PMID: 11514512
J Bacteriol · 2001
0.60