HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
EXOC3L2
exocyst complex component 3 like 2
Chromosome 19 Β· 19q13.32
NCBI Gene: 90332Ensembl: ENSG00000283632.5HGNC: HGNC:30162UniProt: Q2M3D2
21PubMed Papers
21Diseases
0Drugs
3Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingexocytosisexocystbrain malformation renal syndromeDandy-Walker syndromeAbnormality of the skeletal systemcoronary artery disease
✦AI Summary

EXOC3L2 (exocyst complex component 3 like 2) functions as a component of the exocyst protein complex, mediating trafficking of post-Golgi vesicles to the plasma membrane 1. In endothelial cells, EXOC3L2 associates with exocyst proteins EXOC4 and EXOC7, and its upregulation occurs in response to VEGFA signaling, where it is essential for directional endothelial cell migration and angiogenesis 2. Complete loss of EXOC3L2 in mice results in embryonic lethality with hemorrhaging and disrupted cardiovascular and brain development 3. Biallelic EXOC3L2 mutations cause a multisystem syndrome affecting the brain, kidneys, and blood. Clinical manifestations include severe Dandy-Walker malformation with cerebellar vermis agenesis, white matter abnormalities, developmental delay, renal dysplasia, and bone marrow failure 1. EXOC3L2 variants have been identified as candidate genes in ciliopathy disorders 4 and in intrauterine lethal conditions 5. Additionally, the rs597668 polymorphism shows suggestive association with late-onset Alzheimer's disease risk in certain populations 678, though this association requires further validation independent of APOE Ξ΅4 status. EXOC3L2 represents a critical developmental gene whose dysfunction disrupts multiple organ systems.

Sources cited
1
EXOC3L2 associates with exocyst complex proteins and mediates VEGFA-directed endothelial cell migration
PMID: 21566143
2
EXOC3L2 knockout is embryonic lethal with hemorrhaging and is essential for cardiovascular and brain development
PMID: 36362885
3
Biallelic EXOC3L2 mutations cause syndrome affecting hindbrain, kidney, and bone marrow development
PMID: 30327448
4
EXOC3L2 identified as candidate ciliopathy gene with potential links to ciliogenesis
PMID: 27894351
5
EXOC3L2 variants identified in molecular autopsy of intrauterine lethal malformations
PMID: 28749478
6
EXOC3L2 rs597668 shows suggestive association with late-onset Alzheimer's disease
PMID: 21321396
7
EXOC3L2 rs597668 polymorphism associated with Alzheimer's disease in meta-analysis
PMID: 23663385
8
EXOC3L2 rs597668 identified as protective SNP for late-onset Alzheimer's disease
PMID: 26680604
Disease Associationsβ“˜21
brain malformation renal syndromeOpen Targets
0.58Moderate
Dandy-Walker syndromeOpen Targets
0.37Weak
Abnormality of the skeletal systemOpen Targets
0.33Weak
coronary artery diseaseOpen Targets
0.33Weak
myocardial infarctionOpen Targets
0.28Weak
hypertensionOpen Targets
0.28Weak
Meckel syndromeOpen Targets
0.26Weak
heart diseaseOpen Targets
0.24Weak
coronary atherosclerosisOpen Targets
0.21Weak
health study participationOpen Targets
0.21Weak
familial hyperlipidemiaOpen Targets
0.18Weak
parasitic infectionOpen Targets
0.14Weak
Hypomaturation amelogenesis imperfectaOpen Targets
0.07Suggestive
Hypoplastic amelogenesis imperfectaOpen Targets
0.07Suggestive
tooth agenesisOpen Targets
0.06Suggestive
amelogenesis imperfectaOpen Targets
0.06Suggestive
dentin dysplasia type IOpen Targets
0.05Suggestive
cleft palateOpen Targets
0.05Suggestive
OligodontiaOpen Targets
0.05Suggestive
amelogenesis imperfecta, type ijOpen Targets
0.05Suggestive
Brain malformation renal syndromeUniProt
Pathogenic Variants3
NM_001382422.1(EXOC3L2):c.1972dup (p.Gln658fs)Likely pathogenic
EXOC3L2-related brain malformations and/or renal disease
β˜…β˜†β˜†β˜†2023β†’ Residue 658
NC_000019.10:g.45227673dupPathogenic
Meckel-Gruber syndrome|Brain malformation renal syndrome
β˜†β˜†β˜†β˜†2024
NM_001382422.1(EXOC3L2):c.1301T>A (p.Leu434Gln)Pathogenic
Meckel-like syndrome
β˜†β˜†β˜†β˜†2021β†’ Residue 434
View on ClinVar β†—
Related Genes
TNFAIP2Shared pathway100%SYCNShared pathway100%EXOC8Protein interaction100%EXOC3L1Protein interaction99%EXOC1LProtein interaction95%EXOC3L4Protein interaction91%
Tissue Expression6 tissues
Bone Marrow
100%
Heart
77%
Liver
0%
Lung
0%
Brain
0%
Ovary
0%
Gene Interaction Network
Click a node to explore
EXOC3L2TNFAIP2SYCNEXOC8EXOC3L1EXOC1LEXOC3L4
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q2M3D2
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.69LoF Tolerant
pLIβ“˜
0.05Tolerant
Observed/Expected LoF0.46 [0.31–0.69]
RankingsWhere EXOC3L2 stands among ~20K protein-coding genes
  • #13,900of 20,598
    Most Researched21
  • #4,148of 5,498
    Most Pathogenic Variants3
  • #5,171of 17,882
    Most Constrained (LOEUF)0.69
Genes detectedEXOC3L2
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Characterizing the morbid genome of ciliopathies.
PMID: 27894351
Genome Biol Β· 2016
1.00
2
Association between EXOC3L2 rs597668 polymorphism and Alzheimer's disease.
PMID: 23663385
CNS Neurosci Ther Β· 2013
0.90
3
Essential Roles of
PMID: 36362885
Life (Basel) Β· 2022
0.80
4
Exocyst complex component 3-like 2 (EXOC3L2) associates with the exocyst complex and mediates directional migration of endothelial cells.
PMID: 21566143
J Biol Chem Β· 2011
0.70
5
Molecular autopsy in maternal-fetal medicine.
PMID: 28749478
Genet Med Β· 2018
0.60