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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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TAF1B
TATA-box binding protein associated factor, RNA polymerase I subunit B
Chromosome 2 · 2p25.1
NCBI Gene: 9014Ensembl: ENSG00000115750.18HGNC: HGNC:11533UniProt: Q53T94
63PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
RNA polymerase I core promoter sequence-specific DNA bindingprotein bindingRNA polymerase I core factor complexRNA polymerase I preinitiation complex assemblyneurodegenerative diseaseorofacial cleftbasal cell carcinomacleft lip
✦AI Summary

TAF1B is a TFIIB-like general transcription factor component of the human SL1/TIF-IB complex that plays a critical role in RNA polymerase I (Pol I) transcription initiation 1. As a subunit of the Pol I basal transcription machinery, TAF1B contains predicted amino-terminal zinc ribbon and cyclin-like fold domains characteristic of TFIIB-related proteins 1. TAF1B functions in multiple initiation steps: it binds ribosomal DNA promoters and mediates Pol I recruitment to rRNA genes as a component of SL1, and also has an essential postpolymerase recruitment role in preinitiation complex assembly 1. This represents a conserved transcription initiation mechanism paralleling Pol II and III systems 1. Clinically, TAF1B has emerged as a disease-relevant gene in multiple contexts. TAF1B mutations occur with very high frequency (82%) in microsatellite-instable colorectal carcinomas, with evidence suggesting these mutations are selected during tumorigenesis 2. Additionally, TAF1B was identified as a key FOXO3-associated gene in a prognostic model for hepatocellular carcinoma, where elevated TAF1B expression correlates with poor prognosis 3. TAF1B methylation at cg08035323 shows heritable DNA methylation changes associated with blood pressure regulation 4, suggesting broader physiological functions beyond rRNA synthesis.

Sources cited
1
TAF1B is a TFIIB-like protein with zinc ribbon and cyclin-like domains essential for Pol I preinitiation complex assembly and postpolymerase recruitment
PMID: 21921199
2
TAF1B is the human ortholog of yeast Rrn7 and functions as a TFIIB-related Pol I general transcription factor
PMID: 21921198
3
TAF1B encodes TAF(I)63 subunit of SL1 general transcription factor and is localized to chromosome 2p25
PMID: 10894955
4
TAF1B is mutated with 82% frequency in microsatellite-instable colorectal carcinomas with evidence of selection during tumorigenesis
PMID: 12140758
5
TAF1B is a FOXO3-related gene in hepatocellular carcinoma associated with poor prognosis and elevated expression in HCC tissues
PMID: 40114746
6
TAF1B DNA methylation (cg08035323) shows heritable changes that influence blood pressure regulation independent of genetic variants
PMID: 29198723
7
TAF1B localizes to the nucleolus and interacts with pathogenic proteins, confirming its nucleolar function
PMID: 17876161
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.53Moderate
orofacial cleftOpen Targets
0.31Weak
basal cell carcinomaOpen Targets
0.29Weak
cleft lipOpen Targets
0.29Weak
cleft palateOpen Targets
0.29Weak
spermatoceleOpen Targets
0.24Weak
skin neoplasmOpen Targets
0.24Weak
skin cancerOpen Targets
0.23Weak
Abnormality of the skeletal systemOpen Targets
0.21Weak
sexually transmitted diseaseOpen Targets
0.20Weak
deficiency anemiaOpen Targets
0.19Weak
placenta praeviaOpen Targets
0.16Weak
Abnormality of the gastrointestinal tractOpen Targets
0.16Weak
bone remodeling diseaseOpen Targets
0.15Weak
bone fractureOpen Targets
0.14Weak
orofacial cleft 1Open Targets
0.12Weak
hepatocellular carcinomaOpen Targets
0.08Suggestive
retinopathyOpen Targets
0.06Suggestive
Miyoshi myopathyOpen Targets
0.04Suggestive
gastric adenocarcinomaOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
TAF1Protein interaction100%POLR1DProtein interaction100%TBPProtein interaction99%TAF1AProtein interaction95%POLR1GProtein interaction92%NOC2LProtein interaction83%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
55%
Lung
51%
Ovary
49%
Heart
47%
Liver
35%
Gene Interaction Network
Click a node to explore
TAF1BTAF1POLR1DTBPTAF1APOLR1GNOC2L
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q53T94
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.73LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.56 [0.43–0.73]
RankingsWhere TAF1B stands among ~20K protein-coding genes
  • #7,414of 20,598
    Most Researched63
  • #5,682of 17,882
    Most Constrained (LOEUF)0.73
Genes detectedTAF1B
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Yeast Rrn7 and human TAF1B are TFIIB-related RNA polymerase I general transcription factors.
PMID: 21921198
Science · 2011
1.00
2
Genomic localization of the human genes TAF1A, TAF1B and TAF1C, encoding TAF(I)48, TAF(I)63 and TAF(I)110 subunits of class I general transcription initiation factor SL1.
PMID: 10894955
Cytogenet Cell Genet · 2000
0.90
3
Identification of a novel FOXO3‑associated prognostic model in hepatocellular carcinoma.
PMID: 40114746
Oncol Lett · 2025
0.80
4
DNA Methylation Analysis Identifies Loci for Blood Pressure Regulation.
PMID: 29198723
Am J Hum Genet · 2017
0.70
5
Meeting report for Odd Pols 2012.
PMID: 23608169
Gene · 2013
0.60