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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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TAF1C
TATA-box binding protein associated factor, RNA polymerase I subunit C
Chromosome 16 · 16q24.1
NCBI Gene: 9013Ensembl: ENSG00000103168.18HGNC: HGNC:11534UniProt: B3KUE8
60PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
fibrillar centernucleoplasmnucleolusRNA polymerase transcription factor SL1 complexneurodegenerative diseaseGlobal developmental delaySpasticitySeizure
✦AI Summary

TAF1C (TATA-box binding protein associated factor, RNA polymerase I subunit C) is a core component of the SL1/TIF-IB transcription factor complex essential for RNA polymerase I-dependent ribosomal RNA (rRNA) synthesis 1. TAF1C functions by facilitating pre-initiation complex (PIC) assembly at rDNA promoters and recruiting RNA polymerase I through interaction with RRN3, while stabilizing the nucleolar transcription factor UBTF [UniProt]. The gene is located on chromosome 16 as a single-copy locus with alternative transcription patterns 1. Disease relevance has emerged across multiple conditions. TAF1C frameshift mutations occur in 8.8-10.1% of microsatellite-instable gastric and colorectal cancers, with intratumoural heterogeneity detected in 18.8% of colorectal cases 2. Homozygous missense variants cause severe early-onset neurological phenotypes featuring global developmental delay, seizures, cerebral atrophy, and impaired ribosome biogenesis 3. A novel missense variant (p.Ser589Leu) causes neurodevelopmental regression through disrupted nucleolar localization and nucleoplasmic aggregation rather than expression loss 4. TAF1C expression is significantly elevated in type 2 diabetes mellitus, suggesting increased protein synthesis 5. Additionally, TAF1C emerges as a histone modification-related prognostic marker in prostate cancer 6, and exhibits altered expression in PTSD-associated glucocorticoid signaling pathways 7. These findings establish TAF1C as a critical regulator of nucleolar function with broad implications for cancer, neurodegeneration, and metabolic disease.

Sources cited
1
TAF1C genomic localization on chromosome 16q24, single-copy gene with alternative transcription, component of SL1 GTF for rRNA synthesis
PMID: 10894955
2
TAF1C frameshift mutations in 8.8% of MSI-H gastric cancers and 10.1% of MSI-H colorectal cancers; intratumoural heterogeneity in 18.8% of CRC
PMID: 25551296
3
Homozygous TAF1C missense variants cause early-onset neurological phenotype with developmental delay, epilepsy, cerebral atrophy, and reduced mRNA/protein expression
PMID: 32779182
4
Novel TAF1C missense variant (p.Ser589Leu) causes neurodevelopmental regression via loss of nucleolar localization and nucleoplasmic aggregation
PMID: 40371665
5
TAF1C significantly upregulated in type 2 diabetes mellitus, associated with increased protein synthesis
PMID: 31039436
6
TAF1C identified as histone modification-related prognostic marker gene in prostate cancer
PMID: 37565774
7
TAF1C expression altered in PTSD and regulated by glucocorticoid signaling in neuronal cell types
PMID: 37491937
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.46Moderate
Global developmental delayOpen Targets
0.19Weak
Intellectual disabilityOpen Targets
0.18Weak
SeizureOpen Targets
0.18Weak
SpasticityOpen Targets
0.18Weak
StrabismusOpen Targets
0.18Weak
primary ciliary dyskinesiaOpen Targets
0.15Weak
attention deficit hyperactivity disorderOpen Targets
0.09Suggestive
attention deficit-hyperactivity disorder 8Open Targets
0.07Suggestive
hereditary attention deficit-hyperactivity disorderOpen Targets
0.07Suggestive
intellectual disability, autosomal recessive 59Open Targets
0.07Suggestive
movement disorderOpen Targets
0.07Suggestive
schizophrenia 15Open Targets
0.07Suggestive
HematemesisOpen Targets
0.06Suggestive
Phelan-McDermid syndromeOpen Targets
0.05Suggestive
autismOpen Targets
0.05Suggestive
Tourette syndromeOpen Targets
0.05Suggestive
ovarian dysfunctionOpen Targets
0.05Suggestive
Miyoshi myopathyOpen Targets
0.04Suggestive
X-linked non-syndromic intellectual disabilityOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
POLR1AProtein interaction100%POLR1BProtein interaction100%TAF12Protein interaction100%TAF1Protein interaction100%POLIProtein interaction100%TBPProtein interaction99%
Tissue Expression6 tissues
Ovary
100%
Bone Marrow
71%
Lung
60%
Liver
52%
Heart
22%
Brain
9%
Gene Interaction Network
Click a node to explore
TAF1CPOLR1APOLR1BTAF12TAF1POLITBP
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q15572
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.35LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.12 [0.94–1.35]
RankingsWhere TAF1C stands among ~20K protein-coding genes
  • #7,714of 20,598
    Most Researched60
  • #14,123of 17,882
    Most Constrained (LOEUF)1.35
Genes detectedTAF1C
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Frameshift mutations of TAF1C gene, a core component for transcription by RNA polymerase I, and its regional heterogeneity in gastric and colorectal cancers.
PMID: 25551296
Pathology · 2015
1.00
2
Genomic localization of the human genes TAF1A, TAF1B and TAF1C, encoding TAF(I)48, TAF(I)63 and TAF(I)110 subunits of class I general transcription initiation factor SL1.
PMID: 10894955
Cytogenet Cell Genet · 2000
0.90
3
Single-Nucleus Transcriptome Profiling of Dorsolateral Prefrontal Cortex: Mechanistic Roles for Neuronal Gene Expression, Including the 17q21.31 Locus, in PTSD Stress Response.
PMID: 37491937
Am J Psychiatry · 2023
0.80
4
Homozygous TAF1C variants are associated with a novel childhood-onset neurological phenotype.
PMID: 32779182
Clin Genet · 2020
0.70
5
A Novel TAF1C Missense Variant Causes Neurodevelopmental Regression via Disrupted Nucleolar Localization and Nucleoplasmic Aggregation.
PMID: 40371665
Clin Genet · 2025
0.60