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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
TCTN2
tectonic family member 2
Chromosome 12 Β· 12q24.31
NCBI Gene: 79867Ensembl: ENSG00000168778.13HGNC: HGNC:25774UniProt: A0A7P0T8X4
26PubMed Papers
22Diseases
0Drugs
77Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
smoothened signaling pathwaycilium assemblyprotein localization to ciliary transition zoneMKS complexJoubert syndromeMeckel syndromeJoubert syndrome and related disordersMeckel syndrome, type 6
✦AI Summary

TCTN2 is a transition zone protein essential for ciliary structure and hedgehog signaling. As a component of the tectonic-like complex at the ciliary transition zone, TCTN2 functions as a selective barrier regulating transmembrane protein diffusion between the cilium and plasma membrane 1. TCTN2 depletion causes partial transition zone damage, ciliary membrane protein loss, and intraflagellar transport protein leakage, resulting in cilium shortening and structural defects 1. The protein is critical for sonic hedgehog (Shh) pathway activation, particularly in prechordal plate development where reduced hedgehog signaling in TCTN2 mutants leads to increased neuronal cell death and facial midline collapse 2. TCTN2 mutations cause multiple ciliopathies: Meckel-Gruber syndrome (characterized by encephalocele, polycystic kidneys, and polydactyly) 3 and Joubert syndrome (characterized by cerebellar dysplasia and developmental delay) 4. Recent evidence suggests distinct functions for lncRNA TCTN2 in cancer biology and neuroprotection, where it regulates cell proliferation and autophagy through microRNA pathways 56. TCTN2's role in hedgehog signaling-dependent dorsal-ventral patterning can be therapeutically manipulated in neural tissue engineering 7. Understanding TCTN2 mechanisms is crucial for developing ciliopathy treatments.

Sources cited
1
TCTN2 localization at transition zone, its role in ciliary structure integrity, and consequence of depletion on IFT protein leakage and cilium morphology
PMID: 29866362
2
TCTN2 requirement for hedgehog pathway activation in prechordal plate and its role in mediating cell survival signals for facial midline development
PMID: 34672258
3
TCTN2 mutations cause Meckel-Gruber syndrome with specific phenotypes including endocardial pad defects
PMID: 32655147
4
TCTN2 mutations identified in Joubert syndrome patients with cerebellar dysplasia and developmental delay
PMID: 37735380
5
lncRNA TCTN2 promotes hepatocellular carcinoma development through miR-1285-3p/ARF6 axis
PMID: 36278455
6
lncRNA TCTN2 protects neurons from apoptosis by enhancing autophagy through miR-216b-Beclin-1 pathway in spinal cord injury
PMID: 31050183
7
TCTN2 role in dorsal-ventral neural tube patterning and hedgehog signaling can be modeled and therapeutically manipulated
PMID: 40373768
8
TCTN2 as transition zone protein required for ciliogenesis, ciliary membrane regulation, and Shh pathway signaling with roles in multiple ciliopathies
PMID: 30286481
Disease Associationsβ“˜22
Joubert syndromeOpen Targets
0.77Strong
Meckel syndromeOpen Targets
0.73Strong
Joubert syndrome and related disordersOpen Targets
0.67Moderate
Meckel syndrome, type 6Open Targets
0.44Moderate
genetic disorderOpen Targets
0.19Weak
microcephalyOpen Targets
0.11Weak
cancerOpen Targets
0.07Suggestive
anophthalmia plus syndromeOpen Targets
0.05Suggestive
dysraphism-cleft lip/palate-limb reduction defects syndromeOpen Targets
0.05Suggestive
Medeira-Dennis-Donnai syndromeOpen Targets
0.05Suggestive
Meckel syndrome, type 5Open Targets
0.04Suggestive
Acropectorovertebral dysplasiaOpen Targets
0.04Suggestive
anencephaly 2Open Targets
0.04Suggestive
Syndactyly type 2Open Targets
0.04Suggestive
Meckel syndrome, type 2Open Targets
0.04Suggestive
hepatocellular carcinomaOpen Targets
0.04Suggestive
Meckel syndrome, type 4Open Targets
0.04Suggestive
HydrolethalusOpen Targets
0.04Suggestive
hydrolethalus syndrome 2Open Targets
0.04Suggestive
alcohol drinkingOpen Targets
0.04Suggestive
Joubert syndrome 24UniProt
Meckel syndrome 8UniProt
Pathogenic Variants77
NM_024809.5(TCTN2):c.1626del (p.Asp543fs)Pathogenic
Joubert syndrome|Meckel-Gruber syndrome;Joubert syndrome|Joubert syndrome 24;Meckel syndrome, type 8|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 543
NM_024809.5(TCTN2):c.1506-2A>GPathogenic
Meckel syndrome, type 8|TCTN2-related disorder|not provided|Meckel syndrome, type 6|Joubert syndrome and related disorders|Joubert syndrome;Meckel-Gruber syndrome|Joubert syndrome 24|Joubert syndrome 24;Meckel syndrome, type 8
β˜…β˜…β˜†β˜†2026
NM_024809.5(TCTN2):c.1788G>A (p.Trp596Ter)Pathogenic
Meckel syndrome, type 8;Joubert syndrome 24|Joubert syndrome 24
β˜…β˜…β˜†β˜†2025β†’ Residue 596
NM_024809.5(TCTN2):c.1336C>T (p.Arg446Ter)Pathogenic
not provided|Joubert syndrome;Meckel-Gruber syndrome|Joubert syndrome 24
β˜…β˜…β˜†β˜†2025β†’ Residue 446
NM_024809.5(TCTN2):c.267+1G>ALikely pathogenic
Joubert syndrome;Meckel-Gruber syndrome|Joubert syndrome 24;Meckel syndrome, type 8|Uveal melanoma
β˜…β˜…β˜†β˜†2025
NM_024809.5(TCTN2):c.565-1G>ALikely pathogenic
Meckel-Gruber syndrome;Joubert syndrome|Meckel syndrome, type 8;Joubert syndrome 24
β˜…β˜…β˜†β˜†2025
NM_024809.5(TCTN2):c.1612+1G>ALikely pathogenic
Joubert syndrome;Meckel-Gruber syndrome|Meckel syndrome, type 8;Joubert syndrome 24
β˜…β˜…β˜†β˜†2025
NM_024809.5(TCTN2):c.1751T>A (p.Ile584Lys)Pathogenic
Joubert syndrome|Joubert syndrome and related disorders|Meckel-Gruber syndrome;Joubert syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 584
NM_024809.5(TCTN2):c.988C>T (p.Arg330Ter)Pathogenic
Meckel syndrome, type 8|Meckel syndrome, type 8;Joubert syndrome 24|Joubert syndrome;Meckel-Gruber syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 330
NM_024809.5(TCTN2):c.524dup (p.Leu175fs)Pathogenic
Meckel-Gruber syndrome;Joubert syndrome|not provided|Joubert syndrome 24;Meckel syndrome, type 8
β˜…β˜…β˜†β˜†2024β†’ Residue 175
NM_024809.5(TCTN2):c.765-1G>CLikely pathogenic
Joubert syndrome;Meckel-Gruber syndrome|Meckel syndrome, type 8;Joubert syndrome 24
β˜…β˜…β˜†β˜†2024
NM_024809.5(TCTN2):c.703del (p.Leu235fs)Pathogenic
Meckel syndrome, type 8|not provided|Joubert syndrome 24|Joubert syndrome and related disorders|Joubert syndrome;Meckel-Gruber syndrome|Joubert syndrome 24;Meckel syndrome, type 8
β˜…β˜…β˜†β˜†2024β†’ Residue 235
NM_024809.5(TCTN2):c.1806dup (p.Thr603fs)Pathogenic
Joubert syndrome and related disorders|Meckel syndrome, type 8;Joubert syndrome 24
β˜…β˜…β˜†β˜†2024β†’ Residue 603
NM_024809.5(TCTN2):c.1888_1889del (p.Leu630fs)Pathogenic
Meckel-Gruber syndrome;Joubert syndrome|Joubert syndrome 24;Meckel syndrome, type 8
β˜…β˜…β˜†β˜†2024β†’ Residue 630
NM_024809.5(TCTN2):c.916C>T (p.Gln306Ter)Pathogenic
Meckel syndrome, type 8;Joubert syndrome 24|Joubert syndrome;Meckel-Gruber syndrome
β˜…β˜…β˜†β˜†2024β†’ Residue 306
NM_024809.5(TCTN2):c.1550dup (p.His517fs)Pathogenic
Joubert syndrome and related disorders|Meckel syndrome, type 8;Joubert syndrome 24
β˜…β˜…β˜†β˜†2024β†’ Residue 517
NM_024809.5(TCTN2):c.76del (p.Asp26fs)Pathogenic
Joubert syndrome|Joubert syndrome 24;Meckel syndrome, type 8
β˜…β˜…β˜†β˜†2024β†’ Residue 26
NM_024809.5(TCTN2):c.800_801del (p.Val267fs)Pathogenic
Joubert syndrome;Meckel-Gruber syndrome|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 267
NM_024809.5(TCTN2):c.964dup (p.Thr322fs)Pathogenic
not provided|Meckel-Gruber syndrome;Joubert syndrome
β˜…β˜…β˜†β˜†2022β†’ Residue 322
NM_024809.5(TCTN2):c.1206del (p.Phe402fs)Likely pathogenic
Focal segmental glomerulosclerosis
β˜…β˜†β˜†β˜†2026β†’ Residue 402
View on ClinVar β†—
Related Genes
B9D1Protein interaction100%NPHP1Protein interaction99%RPGRIP1LProtein interaction99%TMEM216Protein interaction99%CEP290Protein interaction97%CC2D2AProtein interaction90%
Tissue Expression6 tissues
Ovary
100%
Brain
41%
Heart
37%
Lung
33%
Bone Marrow
30%
Liver
11%
Gene Interaction Network
Click a node to explore
TCTN2B9D1NPHP1RPGRIP1LTMEM216CEP290CC2D2A
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q96GX1
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.99LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.81 [0.66–0.99]
RankingsWhere TCTN2 stands among ~20K protein-coding genes
  • #12,897of 20,598
    Most Researched26
  • #964of 5,498
    Most Pathogenic Variants77 Β· top quartile
  • #9,536of 17,882
    Most Constrained (LOEUF)0.99
Genes detectedTCTN2
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
PMID: 20301500
1.00
2
Establishing dorsal-ventral patterning in human neural tube organoids with synthetic organizers.
PMID: 40373768
Cell Stem Cell Β· 2025
0.90
3
Super-Resolution Imaging Reveals TCTN2 Depletion-Induced IFT88 Lumen Leakage and CiliaryΒ Weakening.
PMID: 29866362
Biophys J Β· 2018
0.80
4
LncRNA TCTN2 Promotes the Malignant Development of Hepatocellular Carcinoma
PMID: 36278455
Recent Pat Anticancer Drug Discov Β· 2023
0.70
5
Ciliary Hedgehog signaling regulates cell survival to build the facial midline.
PMID: 34672258
Elife Β· 2021
0.60