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50 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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TLR9
toll like receptor 9
Chromosome 3 · 3p21.2
NCBI Gene: 54106Ensembl: ENSG00000239732.4HGNC: HGNC:15633UniProt: Q9NR96
827PubMed Papers
20Diseases
11Drugs
1Pathogenic Variants
FUNCTIONAL ROLE
Hub GeneReceptor
RESEARCH IMPACT
Highly Studied
CLINICAL
FDA Approved Target
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
positive regulation of B cell activationnegative regulation of ATPase-coupled calcium transmembrane transporter activitypositive regulation of interferon-alpha productionpositive regulation of interferon-beta productionrheumatoid arthritismalariasystemic lupus erythematosuscutaneous lupus erythematosus
✦AI Summary

TLR9 (Toll-like receptor 9) is an intracellular pattern recognition receptor that serves as a key component of innate and adaptive immunity by recognizing unmethylated cytidine-phosphate-guanosine (CpG) dinucleotides from bacterial and viral DNA 1. Upon activation, TLR9 signals through MYD88 and TRAF6 pathways, leading to NF-κB activation, cytokine secretion, and inflammatory responses 23. The receptor undergoes cyclical palmitoylation at residues C258 and C265, which regulates its trafficking from the Golgi to endosomes and subsequent depalmitoylation by PPT1 facilitates its release from UNC93B1 4. TLR9 plays complex roles in disease pathogenesis. In chr3 obstructive pulmonary disease, TLR9 contributes to sustained airway inflammation by recognizing oxidatively-damaged DNA from neutrophil extracellular traps 5. In Helicobacter infection, TLR9 induces interferon-α production and promotes gastric metaplasia development, with the rs5743836 polymorphism conferring increased cancer risk 6. While TLR9 activation can promote tumor cell proliferation in cholangiocarcinoma 7, it also shows therapeutic potential when targeted with agonists like CpG ODN in glioma treatment 8. Meta-analyses suggest that TLR9 polymorphisms may influence cancer susceptibility 9.

Sources cited
1
TLR9 is a key component of innate/adaptive immunity that recognizes unmethylated CpG dinucleotides
PMID: 14716310
2
TLR9 acts via MYD88 and TRAF6 leading to NF-kappa-B activation
PMID: 11564765
3
TLR9 signaling leads to cytokine secretion and inflammatory response
PMID: 17932028
4
TLR9 undergoes cyclical palmitoylation at C258 and C265, regulated by DHHC3 and PPT1
PMID: 38169466
5
TLR9 recognizes NETs-DNA and promotes NF-κB-dependent autoimmunity in COPD
PMID: 38880789
6
TLR9 induces IFNα production in Helicobacter infection and rs5743836 variant increases cancer risk
PMID: 35487288
7
TLR9 promotes cholangiocarcinoma cell proliferation and tumor development
PMID: 33939146
8
TLR9 agonists like CpG ODN show therapeutic potential in glioma treatment
PMID: 36611945
9
Meta-analysis shows TLR9 polymorphisms are associated with cancer risk
PMID: 23990988
Disease Associationsⓘ20
rheumatoid arthritisOpen Targets
0.62Moderate
malariaOpen Targets
0.58Moderate
systemic lupus erythematosusOpen Targets
0.51Moderate
cutaneous lupus erythematosusOpen Targets
0.46Moderate
COVID-19Open Targets
0.44Moderate
severe acute respiratory syndromeOpen Targets
0.39Weak
infectionOpen Targets
0.36Weak
melanomaOpen Targets
0.36Weak
coronavirus infectious diseaseOpen Targets
0.34Weak
pregnancyOpen Targets
0.33Weak
acute respiratory distress syndromeOpen Targets
0.33Weak
pulmonary sarcoidosisOpen Targets
0.33Weak
ulcerative colitisOpen Targets
0.33Weak
Sjogren syndromeOpen Targets
0.31Weak
colorectal cancerOpen Targets
0.31Weak
HIV infectionOpen Targets
0.30Weak
antiphospholipid syndromeOpen Targets
0.29Weak
Insulin resistanceOpen Targets
0.28Weak
preeclampsiaOpen Targets
0.28Weak
lymphomaOpen Targets
0.27Weak
Pathogenic Variants1
NM_017442.4(TLR9):c.548C>G (p.Pro183Arg)Likely pathogenic
Esophageal atresia/tracheoesophageal fistula
☆☆☆☆2019→ Residue 183
View on ClinVar ↗
Drug Targets11
1018 ISSPhase III
Toll-like receptor 9 agonist
lymphoma
AGATOLIMODPhase II
Toll-like receptor 9 agonist
lung cancer
AGATOLIMOD SODIUMPhase II
Toll-like receptor 9 agonist
carcinoma
BAZLITORANPhase II
Toll-like receptor 7 antagonist
rheumatoid arthritis
COBITOLIMODPhase III
Toll-like receptor 9 agonist
ulcerative colitis
EMD-1201081Phase II
Toll-like receptor 9 agonist
renal cell carcinoma
HYDROXYCHLOROQUINEApproved
Toll-like receptor 7 antagonist
malaria
HYDROXYCHLOROQUINE SULFATEApproved
Toll-like receptor 7 antagonist
rheumatoid arthritis
LEFITOLIMODPhase III
Toll-like receptor 9 agonist
colorectal cancer
TILSOTOLIMODPhase III
Toll-like receptor 9 agonist
melanoma
TILSOTOLIMOD SODIUMPhase II
Toll-like receptor 9 agonist
metastatic melanoma
Related Genes
CD8AProtein interaction100%BECN1Protein interaction100%TICAM2Protein interaction99%SYKProtein interaction98%IL10Protein interaction98%FPR1Protein interaction98%
Tissue Expression6 tissues
Ovary
100%
Lung
80%
Bone Marrow
40%
Liver
33%
Brain
10%
Heart
0%
Gene Interaction Network
Click a node to explore
TLR9CD8ABECN1TICAM2SYKIL10FPR1
PROTEIN STRUCTURE
Preparing viewer…
PDB9L48 · 1.90 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.12LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.78 [0.56–1.12]
RankingsWhere TLR9 stands among ~20K protein-coding genes
  • #229of 20,598
    Most Researched827 · top 5%
  • #501of 1,025
    FDA-Approved Drug Targets2
  • #4,606of 5,498
    Most Pathogenic Variants1
  • #11,461of 17,882
    Most Constrained (LOEUF)1.12
Genes detectedTLR9
Sources retrieved50 papers
Response time—
📄 Sources
50▼
1
DNA of neutrophil extracellular traps promote NF-κB-dependent autoimmunity via cGAS/TLR9 in chronic obstructive pulmonary disease.
PMID: 38880789
Signal Transduct Target Ther · 2024
1.00
2
Cyclical palmitoylation regulates TLR9 signalling and systemic autoimmunity in mice.
PMID: 38169466
Nat Commun · 2024
0.90
3
Association of TLR4 and TLR9 gene polymorphisms with cervical HR-HPV infection status in Chinese Han population.
PMID: 36915050
BMC Infect Dis · 2023
0.88
4
Gene Polymorphisms of
PMID: 32967147
Genes (Basel) · 2020
0.82
5
Forecasting most deleterious nsSNPs in human
PMID: 36633945
Syst Biol Reprod Med · 2023
0.80