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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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TMEM216
transmembrane protein 216
Chromosome 11 Β· 11q12.2
NCBI Gene: 51259Ensembl: ENSG00000187049.11HGNC: HGNC:25018UniProt: J3QT25
22PubMed Papers
23Diseases
0Drugs
55Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
ciliumprotein bindingcilium assemblypositive regulation of cilium assemblyJoubert syndromeJoubert syndrome 2Meckel syndrome, type 2Meckel syndrome
✦AI Summary

TMEM216 is a ciliary transition zone tetraspan transmembrane protein essential for primary ciliogenesis and photoreceptor outer segment integrity. 1 TMEM216 localizes to the ciliary base and forms a complex with Meckelin, with loss-of-function mutations causing defective ciliogenesis and centrosomal docking. 1 In photoreceptors, TMEM216 is critical for normal outer segment disc morphogenesis and protein localization; tmem216 knockout zebrafish exhibit mislocalized rhodopsin and cone opsins, shortened ciliary axonemes, and abnormal disc structures leading to photoreceptor degeneration. 2 Reduced TMEM216 expression from non-coding promoter variants causes non-syndromic retinitis pigmentosa with progressive photoreceptor loss. 3 TMEM216 mutations cause syndromic ciliopathies including Joubert syndrome, Meckel syndrome, and related disorders characterized by neurological and renal manifestations. 1 4 Functionally, TMEM216 perturbations result in hyperactivation of RhoA and Dishevelled signaling and defective ciliogenesis. 1 TMEM216 variants have also been identified in unilateral polymicrogyria, suggesting broader developmental roles. 5 The protein's role in ciliary structure and signaling underlies its pleiotropic disease associations affecting sensory organs, kidney, and brain development.

Sources cited
1
TMEM216 is a tetraspan transmembrane protein mutated in Joubert and Meckel syndromes; localizes to ciliary base; loss causes defective ciliogenesis, centrosomal docking, and hyperactivation of RhoA and Dishevelled
PMID: 20512146
2
TMEM216 deletion in zebrafish causes mislocalization of rhodopsin and cone opsins, shortened ciliary axonemes, abnormal outer segment disc morphology, and photoreceptor degeneration
PMID: 32687549
3
Non-coding promoter variants upstream of TMEM216 reduce gene expression and cause non-syndromic retinitis pigmentosa with progressive photoreceptor loss
PMID: 39191256
4
TMEM216 mutations cause Joubert syndrome 2 with manifestations including psychomotor retardation, cerebellar vermis hypoplasia, and variable retinal and renal involvement
PMID: 20036350
5
TMEM216 variants identified in unilateral polymicrogyria, representing first report of association with this cortical development malformation
PMID: 41670011
Disease Associationsβ“˜23
Joubert syndromeOpen Targets
0.76Strong
Joubert syndrome 2Open Targets
0.75Strong
Meckel syndrome, type 2Open Targets
0.69Moderate
Meckel syndromeOpen Targets
0.65Moderate
Joubert syndrome with oculorenal defectOpen Targets
0.62Moderate
retinitis pigmentosa 98Open Targets
0.45Moderate
genetic disorderOpen Targets
0.45Moderate
Joubert syndrome with orofaciodigital defectOpen Targets
0.38Weak
ciliopathyOpen Targets
0.37Weak
retinitis pigmentosaOpen Targets
0.37Weak
orofaciodigital syndrome type 6Open Targets
0.37Weak
Joubert syndrome and related disordersOpen Targets
0.34Weak
retinopathyOpen Targets
0.34Weak
Abnormality of the nervous systemOpen Targets
0.27Weak
Retinal dystrophyOpen Targets
0.15Weak
microcephalyOpen Targets
0.11Weak
Short rib-polydactyly syndrome, Verma-Naumoff typeOpen Targets
0.04Suggestive
type 2 diabetes mellitusOpen Targets
0.04Suggestive
Syndactyly type 2Open Targets
0.04Suggestive
brachydactyly type COpen Targets
0.04Suggestive
Joubert syndrome 2UniProt
Meckel syndrome 2UniProt
Retinitis pigmentosa 98UniProt
Pathogenic Variants55
NM_001173990.3(TMEM216):c.218G>A (p.Arg73His)Pathogenic
Joubert syndrome 2|Meckel syndrome, type 2|Joubert syndrome|Joubert syndrome 2;Meckel syndrome, type 2
β˜…β˜…β˜†β˜†2026β†’ Residue 73
NM_001173990.3(TMEM216):c.218G>T (p.Arg73Leu)Pathogenic
Joubert syndrome 2|Meckel syndrome, type 2|not provided|Joubert syndrome|Inborn genetic diseases|TMEM216-related disorder|Joubert syndrome 2;Meckel syndrome, type 2
β˜…β˜…β˜†β˜†2026β†’ Residue 73
NM_001173990.3(TMEM216):c.35-2A>GLikely pathogenic
Meckel syndrome, type 2|Joubert syndrome 2|Joubert syndrome|Retinitis pigmentosa 98|Joubert syndrome 2;Meckel syndrome, type 2
β˜…β˜…β˜†β˜†2025
NM_001173990.3(TMEM216):c.35-13_36delLikely pathogenic
not provided|Joubert syndrome 2|Joubert syndrome|Joubert syndrome 2;Meckel syndrome, type 2
β˜…β˜…β˜†β˜†2025
NM_001173990.3(TMEM216):c.230-2A>GLikely pathogenic
Joubert syndrome|Meckel syndrome, type 2;Joubert syndrome 2|Joubert syndrome 2
β˜…β˜…β˜†β˜†2025
NM_001173991.3(TMEM216):c.-69G>TPathogenic
Retinitis pigmentosa 98|not provided|Joubert syndrome and related disorders|Retinal disorder
β˜…β˜…β˜†β˜†2025
NM_001173990.3(TMEM216):c.398T>G (p.Leu133Ter)Pathogenic
Joubert syndrome 2|not provided|Joubert syndrome|Joubert syndrome 2;Meckel syndrome, type 2|TMEM216-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 133
NM_001173990.3(TMEM216):c.253C>T (p.Arg85Ter)Pathogenic
Meckel syndrome, type 2|Joubert syndrome 2|not provided|TMEM216-related disorder|Joubert syndrome|Joubert syndrome 2;Meckel syndrome, type 2
β˜…β˜…β˜†β˜†2025β†’ Residue 85
NM_001173990.3(TMEM216):c.230-1G>CLikely pathogenic
Joubert syndrome 2;Meckel syndrome, type 2|Joubert syndrome
β˜…β˜…β˜†β˜†2025
NM_001173990.3(TMEM216):c.67del (p.Leu23fs)Pathogenic
not provided|Joubert syndrome|Joubert syndrome 2|Joubert syndrome 2;Meckel syndrome, type 2
β˜…β˜…β˜†β˜†2025β†’ Residue 23
NM_001173990.3(TMEM216):c.34+2T>CLikely pathogenic
Meckel syndrome, type 2|Joubert syndrome 2|Joubert syndrome|Joubert syndrome 2;Meckel syndrome, type 2
β˜…β˜…β˜†β˜†2024
NM_001173990.3(TMEM216):c.137-1G>ALikely pathogenic
Joubert syndrome|Joubert syndrome 2;Meckel syndrome, type 2|Joubert syndrome 2
β˜…β˜…β˜†β˜†2024
NM_001173990.3(TMEM216):c.222del (p.Phe76fs)Likely pathogenic
Joubert syndrome 2|Meckel syndrome, type 2|not provided|Joubert syndrome 2;Meckel syndrome, type 2
β˜…β˜…β˜†β˜†2024β†’ Residue 76
NM_001173990.3(TMEM216):c.229+1G>ALikely pathogenic
Joubert syndrome|Joubert syndrome 2|Joubert syndrome 2;Meckel syndrome, type 2
β˜…β˜…β˜†β˜†2024
NM_001173990.3(TMEM216):c.137-2A>GLikely pathogenic
Joubert syndrome|Joubert syndrome 2
β˜…β˜…β˜†β˜†2024
NM_001173990.3(TMEM216):c.87G>A (p.Trp29Ter)Pathogenic
Joubert syndrome|Joubert syndrome 2
β˜…β˜…β˜†β˜†2024β†’ Residue 29
NM_001173990.3(TMEM216):c.191del (p.Leu64fs)Pathogenic
not provided|Joubert syndrome 2
β˜…β˜…β˜†β˜†2023β†’ Residue 64
NM_001173990.3(TMEM216):c.-69G>APathogenic
Joubert syndrome and related disorders
β˜…β˜†β˜†β˜†2026
NM_001173990.3(TMEM216):c.40_41insT (p.Arg14fs)Likely pathogenic
Joubert syndrome 2
β˜…β˜†β˜†β˜†2025β†’ Residue 14
NM_001173990.3(TMEM216):c.40del (p.Arg14fs)Likely pathogenic
Joubert syndrome 2
β˜…β˜†β˜†β˜†2024β†’ Residue 14
View on ClinVar β†—
Related Genes
TMEM231Protein interaction100%NPHP3Protein interaction100%TCTN3Protein interaction99%B9D1Protein interaction99%TCTN2Protein interaction99%OFD1Protein interaction99%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
95%
Lung
37%
Liver
28%
Heart
26%
Brain
24%
Gene Interaction Network
Click a node to explore
TMEM216TMEM231NPHP3TCTN3B9D1TCTN2OFD1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q9P0N5
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.45LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.90 [0.57–1.45]
RankingsWhere TMEM216 stands among ~20K protein-coding genes
  • #13,779of 20,598
    Most Researched22
  • #1,251of 5,498
    Most Pathogenic Variants55 Β· top quartile
  • #14,882of 17,882
    Most Constrained (LOEUF)1.45
Genes detectedTMEM216
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Ciliopathies and the Kidney: A Review.
PMID: 33039432
Am J Kidney Dis Β· 2021
1.00
2
PMID: 20301500
0.90
3
Substitution of a single non-coding nucleotide upstream of TMEM216 causes non-syndromic retinitis pigmentosa and is associated with reduced TMEM216 expression.
PMID: 39191256
Am J Hum Genet Β· 2024
0.80
4
TMEM216 Deletion Causes Mislocalization of Cone Opsin and Rhodopsin and Photoreceptor Degeneration in Zebrafish.
PMID: 32687549
Invest Ophthalmol Vis Sci Β· 2020
0.70
5
Mutations in TMEM216 perturb ciliogenesis and cause Joubert, Meckel and related syndromes.
PMID: 20512146
Nat Genet Β· 2010
0.60