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GeneE
4 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
TMEM242
transmembrane protein 242
Chromosome 6 Β· 6q25.3
NCBI Gene: 729515Ensembl: ENSG00000215712.12HGNC: HGNC:17206UniProt: Q9NWH2
22PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingmitochondrial proton-transporting ATP synthase complex assemblymitochondrionmitochondrial inner membraneneurodegenerative diseasesmoking initiationpericarditisspontaneous abortion
✦AI Summary

TMEM242 is a scaffold protein that facilitates mitochondrial ATP synthase assembly, primarily through regulation of the c-ring rotor 1. It promotes membrane insertion and oligomerization of subunit c/ATP5MC3 and influences incorporation of additional subunits including MT-ATP6, MT-ATP8, ATP5MJ, and ATP5MK 1. TMEM242 operates cooperatively with TMEM70 in this process; while deletion of either protein alone impairs but does not eliminate ATP synthase assembly, simultaneous deletion of both proteins prevents assembly entirely 1. Beyond ATP synthase, TMEM242 interacts with the mitochondrial complex I assembly (MCIA) complex, suggesting broader roles in respiratory enzyme complex assembly 1. Functionally, TMEM242 is implicated in mitochondrial respiration 2. Disease relevance emerges from zebrafish studies showing tmem242 knockdown increases reactive oxygen species (ROS) through impaired ATP synthase, leading to altered coagulation factor expression and bleeding phenotypes resembling disseminated intravascular coagulation 3. Additionally, TMEM242 expression variations correlate with head circumference in 16p11.2 copy number variant carriers associated with neurodevelopmental disorders 4, though the mechanistic significance requires further investigation in neuronal cell types.

Sources cited
1
TMEM242 facilitates c-ring assembly of ATP synthase by promoting membrane insertion and oligomerization of subunit c, influences incorporation of MT-ATP6, MT-ATP8, ATP5MJ, and ATP5MK, interacts with MCIA complex, and cooperates with TMEM70
PMID: 33753518
2
Genome-scale Perturb-seq identified TMEM242 as a regulator of mitochondrial respiration
PMID: 35688146
3
Zebrafish tmem242 knockdown impairs ATP synthase assembly, increases ROS production, elevates coagulation factor gene expression, and results in bleeding and microthrombi formation
PMID: 39856164
4
TMEM242 expression correlates with head circumference in 16p11.2 copy number variant carriers associated with neurodevelopmental disorders
PMID: 26391891
⚠Limited data available β€” This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜20
neurodegenerative diseaseOpen Targets
0.47Moderate
smoking initiationOpen Targets
0.33Weak
pericarditisOpen Targets
0.13Weak
spontaneous abortionOpen Targets
0.13Weak
Abnormality of the skeletal systemOpen Targets
0.09Suggestive
risk-taking behaviourOpen Targets
0.09Suggestive
retinopathyOpen Targets
0.09Suggestive
retinoschisisOpen Targets
0.09Suggestive
purpuraOpen Targets
0.09Suggestive
trauma complicationOpen Targets
0.07Suggestive
chondromalaciaOpen Targets
0.07Suggestive
intelligenceOpen Targets
0.07Suggestive
ovarian neoplasmOpen Targets
0.07Suggestive
temporomandibular joint disorderOpen Targets
0.06Suggestive
BlindnessOpen Targets
0.06Suggestive
Myasthenia gravisOpen Targets
0.04Suggestive
bladder calculusOpen Targets
0.04Suggestive
congenital anomaly of cardiovascular systemOpen Targets
0.03Suggestive
irritable bowel syndromeOpen Targets
0.02Suggestive
response to statinOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar β†—
Related Genes
FMC1Shared pathway100%TMEM70Protein interaction54%ATPAF1Shared pathway50%ATPAF2Shared pathway50%ATP23Shared pathway33%ATP5F1DShared pathway20%
Tissue Expression6 tissues
Heart
100%
Bone Marrow
81%
Brain
71%
Liver
41%
Ovary
37%
Lung
31%
Gene Interaction Network
Click a node to explore
TMEM242FMC1TMEM70ATPAF1ATPAF2ATP23ATP5F1D
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q9NWH2
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.93LoF Tolerant
pLIβ“˜
0.03Tolerant
Observed/Expected LoF0.53 [0.32–0.93]
RankingsWhere TMEM242 stands among ~20K protein-coding genes
  • #13,781of 20,598
    Most Researched22
  • #8,643of 17,882
    Most Constrained (LOEUF)0.93
Genes detectedTMEM242
Sources retrieved4 papers
Response timeβ€”
πŸ“„ Sources
4
1
Mapping information-rich genotype-phenotype landscapes with genome-scale Perturb-seq.
PMID: 35688146
Cell Β· 2022
1.00
2
The Influence of Microdeletions and Microduplications of 16p11.2 on Global Transcription Profiles.
PMID: 26391891
J Child Neurol Β· 2015
0.75
3
TMEM70 and TMEM242 help to assemble the rotor ring of human ATP synthase and interact with assembly factors for complex I.
PMID: 33753518
Proc Natl Acad Sci U S A Β· 2021
0.50
4
Knockdown of zebrafish tmem242 enhances the production of ROS that signals to increase f9a expression resulting in DIC-like condition.
PMID: 39856164
Sci Rep Β· 2025
0.25