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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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TMLHE
trimethyllysine hydroxylase, epsilon
Chromosome X Β· Xq28
NCBI Gene: 55217Ensembl: ENSG00000185973.13HGNC: HGNC:18308UniProt: Q9NVH6
38PubMed Papers
21Diseases
0Drugs
5Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
carnitine biosynthetic processtrimethyllysine dioxygenase activitymitochondrionmitochondrial matrixautismCerebellar vermis hypoplasiaAgenesis of corpus callosumisolated cerebellar hypoplasia/agenesis
✦AI Summary

TMLHE (trimethyllysine hydroxylase, epsilon) encodes an enzyme that catalyzes the first committed step in carnitine biosynthesis, converting trimethyllysine to hydroxytrimethyllysine 1. Located on the X chrX, TMLHE functions in the mitochondrial matrix and is essential for carnitine production, a critical cofactor for fatty acid Ξ²-oxidation and brain function 2. TMLHE deficiency impairs carnitine biosynthesis, leading to increased trimethyllysine accumulation and decreased Ξ³-butyrobetaine production, detectable through metabolic screening 1. The enzyme's role in carnitine metabolism links mitochondrial function to broader metabolic regulation; disrupted TMLHE function contributes to mitochondrial dysfunction and impaired carnitine homeostasis in disease states 3. TMLHE mutations are pathogenic in X-linked autism type 6, with deletions and novel variants identified in autistic individuals with intellectual disability 41. TMLHE deficiency occurs in approximately 1 in 366 males but shows 2.82-fold enrichment in male-male multiplex autism families, suggesting it is a genetic risk factor for autism with low penetrance 5. Brain carnitine deficiency from TMLHE dysfunction may contribute to 10-20% of nonsyndromic autism cases, particularly affecting males 2. Notably, carnitine supplementation has reversed regressive autism symptoms in patients with TMLHE mutations, indicating therapeutic potential 6.

Sources cited
1
TMLHE encodes N-trimethyllysine hydroxylase catalyzing the first step in carnitine biosynthesis; deficiency causes X-linked autism type 6 with intellectual disability and autism spectrum disorder symptoms
PMID: 39845198
2
TMLHE deficiency is a risk factor for autism; brain carnitine deficiency may cause 10-20% of nonsyndromic autism with extreme male bias
PMID: 28703319
3
TMLHE participates in carnitine metabolism regulation linked to mitochondrial function and metabolic homeostasis
PMID: 41139215
4
TMLHE deletions identified in autism spectrum disorder patients through whole-genome sequencing analysis
PMID: 39610113
5
TMLHE deficiency is 2.82-fold more frequent in male-male multiplex autism families; a risk factor for autism with 2-4% penetrance
PMID: 22566635
6
Carnitine supplementation reversed regressive autism symptoms and restored developmental milestones in a child with TMLHE mutation
PMID: 25943046
Disease Associationsβ“˜21
autismOpen Targets
0.64Moderate
Agenesis of corpus callosumOpen Targets
0.26Weak
Cerebellar vermis hypoplasiaOpen Targets
0.26Weak
isolated cerebellar hypoplasia/agenesisOpen Targets
0.26Weak
Hashimoto's thyroiditisOpen Targets
0.23Weak
neuroinflammatory disorderOpen Targets
0.18Weak
Intellectual disabilityOpen Targets
0.12Weak
sleep apneaOpen Targets
0.04Suggestive
Sleep DisorderOpen Targets
0.03Suggestive
autism spectrum disorderOpen Targets
0.01Suggestive
methylmalonic acidemiaOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
COVID-19Open Targets
0.01Suggestive
hyperinsulinemic hypoglycemia, familial, 4Open Targets
0.00Suggestive
systemic primary carnitine deficiency diseaseOpen Targets
0.00Suggestive
Alzheimer diseaseOpen Targets
0.00Suggestive
Asperger syndromeOpen Targets
0.00Suggestive
combined immunodeficiency due to DOCK8 deficiencyOpen Targets
0.00Suggestive
Fanconi anemiaOpen Targets
0.00Suggestive
formiminoglutamic aciduriaOpen Targets
0.00Suggestive
Autism, X-linked 6UniProt
Pathogenic Variants5
NM_018196.4(TMLHE):c.961_962del (p.Ile321fs)Pathogenic
Epsilon-trimethyllysine hydroxylase deficiency
β˜…β˜…β˜†β˜†2022β†’ Residue 321
NC_000023.11:g.(?_155530103)_(155550495_?)delLikely pathogenic
Schizophrenia
β˜…β˜†β˜†β˜†2018
NC_000023.11:g.(?_155531678)_(155556173_?)delLikely pathogenic
Schizophrenia
β˜…β˜†β˜†β˜†2018
NM_018196.4(TMLHE):c.277C>T (p.Arg93Cys)Likely pathogenic
Cerebellar vermis hypoplasia;Corpus callosum, agenesis of|Congenital cerebellar hypoplasia
β˜†β˜†β˜†β˜†2019β†’ Residue 93
NM_018196.4(TMLHE):c.638+2delLikely pathogenic
Epsilon-trimethyllysine hydroxylase deficiency
β˜†β˜†β˜†β˜†2018
View on ClinVar β†—
Related Genes
BBOX1Shared pathway100%TRIM5Protein interaction95%TRIM31Protein interaction93%TRIM17Protein interaction93%TRIM36Protein interaction83%TRAT1Protein interaction77%
Tissue Expression6 tissues
Heart
100%
Brain
90%
Ovary
45%
Liver
42%
Lung
34%
Bone Marrow
17%
Gene Interaction Network
Click a node to explore
TMLHEBBOX1TRIM5TRIM31TRIM17TRIM36TRAT1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q9NVH6
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.04LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.70 [0.48–1.04]
RankingsWhere TMLHE stands among ~20K protein-coding genes
  • #10,558of 20,598
    Most Researched38
  • #3,604of 5,498
    Most Pathogenic Variants5
  • #10,327of 17,882
    Most Constrained (LOEUF)1.04
Genes detectedTMLHE
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
XIAP-ULK1-mediated mitophagy modulates carnitine metabolism to mitigate diabetic kidney disease.
PMID: 41139215
Autophagy Β· 2026
1.00
2
Whole-genome sequencing analysis of Japanese autism spectrum disorder trios.
PMID: 39610113
Psychiatry Clin Neurosci Β· 2025
0.90
3
X-Linked Autism Type 9 Caused by a Hemizygote Pathogenic Variant in the
PMID: 39845198
Int Med Case Rep J Β· 2025
0.80
4
Genomic alterations in normal breast tissues preceding breast cancer diagnosis.
PMID: 40264151
Breast Cancer Res Β· 2025
0.70
5
Brain carnitine deficiency causes nonsyndromic autism with an extreme male bias: A hypothesis.
PMID: 28703319
Bioessays Β· 2017
0.60