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GeneE
50 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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TP63
tumor protein p63
Chromosome 3 Β· 3q28
NCBI Gene: 8626Ensembl: ENSG00000073282.14HGNC: HGNC:15979UniProt: A0A0S2Z4N5
965PubMed Papers
28Diseases
0Drugs
128Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedTranscription Factor
RESEARCH IMPACT
Highly StudiedTrendingVariant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
negative regulation of DNA-templated transcriptionpositive regulation of Notch signaling pathwayMDM2/MDM4 family protein bindingnucleusectrodactyly, ectodermal dysplasia, and cleft lip-palate syndrome 3Ankyloblepharon - ectodermal defects - cleft lip/palateADULT syndromelimb-mammary syndrome
✦AI Summary

TP63 is a p53 family member that functions as a sequence-specific DNA-binding transcriptional regulator with isoform-dependent activities 1. The gene produces multiple isoforms: transactivation-domain-containing (TA) isoforms that resemble p53 in activating transcription and inducing cell cycle arrest and apoptosis, and delta-N (Ξ”N) isoforms that lack transactivation domains and function as dominant-negative inhibitors 1. Ξ”Np63Ξ±, the predominant isoform in epithelial tissues, acts as a pioneer factor that orchestrates chr3 remodeling and enhancer reprogramming to establish tissue-specific gene expression patterns 2. Unlike TP53, TP63 is rarely inactivated in cancer but frequently amplified (~25%) in squamous cell carcinomas, with Ξ”N isoforms promoting oncogenesis through enhancer-driven activation of oncogenic targets including MYC 32. TP63 fusions in lymphomas act as bona fide oncogenes, recruiting epigenetic complexes (NCoR-HDAC3, KMT2D) to create therapeutic vulnerabilities, notably EZH2 dependence 4. Developmentally, TP63 is essential for epithelial morphogenesis, limb formation, and maintaining stem cell compartments 1. Heterozygous TP63 mutations cause multiple developmental syndromes including ectrodactyly-ectodermal dysplasia-cleft palate (EEC), limb-mammary syndrome, and non-syndromic cleft lip 5. TA isoforms can induce chemosensitivity through p53-like mechanisms 3, while dysregulated expression underlies both developmental and oncogenic phenotypes.

Sources cited
1
TP63 produces TA and Ξ”N isoforms with opposing transcriptional activities; TA isoforms activate transcription and induce apoptosis similar to p53; Ξ”N isoforms act as dominant-negative inhibitors; p63 is essential for development rather than tumor suppression in mice
PMID: 11733180
2
Heterozygous TP63 mutations cause multiple developmental syndromes including EEC (ectrodactyly, ectodermal dysplasia, cleft lip/palate), limb-mammary syndrome, and non-syndromic cleft malformations
PMID: 17224651
3
TP63 amplification occurs in ~25% of squamous cell carcinomas; Ξ”Np63 overexpression counteracts growth suppression; TAp63 can induce cell cycle arrest and apoptosis in DNA-damaged cells and acts as a chemosensitivity factor
PMID: 17182369
4
TP63 fusions in lymphomas are oncogenic and recruit NCoR-HDAC3 and KMT2D complexes; they drive MYC upregulation and PRC2 component expression; EZH2 inhibition is therapeutically effective against TP63 fusion lymphomas
PMID: 37729434
5
Ξ”Np63Ξ± acts as an epidermal-specific pioneer factor that binds closed chromatin and enhances accessibility at epidermal enhancers; it coordinates chromatin remodeling and establishes squamous-like enhancer landscapes for oncogenic target expression in SCC
PMID: 32447427
Disease Associationsβ“˜28
ectrodactyly, ectodermal dysplasia, and cleft lip-palate syndrome 3Open Targets
0.83Strong
Ankyloblepharon - ectodermal defects - cleft lip/palateOpen Targets
0.80Strong
ADULT syndromeOpen Targets
0.79Strong
limb-mammary syndromeOpen Targets
0.79Strong
Rapp-Hodgkin syndromeOpen Targets
0.77Strong
Split hand-split foot malformationOpen Targets
0.77Strong
ankyloblepharon-ectodermal defects-cleft lip/palate syndromeOpen Targets
0.73Strong
orofacial cleft 8Open Targets
0.71Strong
split hand-foot malformation 4Open Targets
0.71Strong
lung carcinomaOpen Targets
0.61Moderate
lung adenocarcinomaOpen Targets
0.59Moderate
tp63-related spectrum disordersOpen Targets
0.57Moderate
premature ovarian failure 21Open Targets
0.53Moderate
non-small cell lung carcinomaOpen Targets
0.52Moderate
neurodegenerative diseaseOpen Targets
0.51Moderate
genetic disorderOpen Targets
0.49Moderate
Premature ovarian insufficiencyOpen Targets
0.48Moderate
EEC syndromeOpen Targets
0.47Moderate
lung cancerOpen Targets
0.47Moderate
seborrheic keratosisOpen Targets
0.43Moderate
Acro-dermato-ungual-lacrimal-tooth syndromeUniProt
Ankyloblepharon-ectodermal defects-cleft lip/palateUniProt
Ectrodactyly, ectodermal dysplasia, and cleft lip/palate syndrome 3UniProt
Limb-mammary syndromeUniProt
Orofacial cleft 8UniProt
Premature ovarian failure 21UniProt
Rapp-Hodgkin syndromeUniProt
Split-hand/foot malformation 4UniProt
Pathogenic Variants128
NM_001114980.2(TP63):c.1A>G (p.Met1Val)Pathogenic
not provided|TP63-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 1
NM_003722.5(TP63):c.1009C>T (p.Arg337Ter)Pathogenic
not provided|TP63-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 337
NM_003722.5(TP63):c.728G>A (p.Arg243Gln)Pathogenic
Ectrodactyly, ectodermal dysplasia, and cleft lip-palate syndrome 3|TP63-Related Spectrum Disorders|not provided|Split hand-foot malformation 4
β˜…β˜…β˜†β˜†2025β†’ Residue 243
NM_003722.5(TP63):c.953G>A (p.Arg318His)Pathogenic
Ectrodactyly, ectodermal dysplasia, and cleft lip-palate syndrome 3|Rapp-Hodgkin syndrome|TP63-Related Spectrum Disorders|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 318
NM_003722.5(TP63):c.970_972del (p.Ile324del)Likely pathogenic
not provided|TP63-related disorder|Ectrodactyly, ectodermal dysplasia, and cleft lip-palate syndrome 3
β˜…β˜…β˜†β˜†2025β†’ Residue 324
NM_003722.5(TP63):c.1177C>T (p.Arg393Ter)Pathogenic
not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 393
NM_003722.5(TP63):c.1027C>T (p.Arg343Trp)Pathogenic
not provided|TP63-Related Spectrum Disorders|Ectrodactyly, ectodermal dysplasia, and cleft lip-palate syndrome 3|Rapp-Hodgkin syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 343
NM_003722.5(TP63):c.952C>T (p.Arg318Cys)Pathogenic
TP63-Related Spectrum Disorders|not provided|TP63-related disorder|Ectrodactyly, ectodermal dysplasia, and cleft lip-palate syndrome 3
β˜…β˜…β˜†β˜†2025β†’ Residue 318
NM_003722.5(TP63):c.797G>A (p.Arg266Gln)Pathogenic
ADULT syndrome|Ectrodactyly, ectodermal dysplasia, and cleft lip-palate syndrome 3|not provided|TP63-Related Spectrum Disorders
β˜…β˜…β˜†β˜†2025β†’ Residue 266
NM_003722.5(TP63):c.1727T>C (p.Ile576Thr)Pathogenic
not provided|TP63-Related Spectrum Disorders|TP63-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 576
NM_003722.5(TP63):c.1682G>A (p.Cys561Tyr)Likely pathogenic
not provided|TP63-Related Spectrum Disorders
β˜…β˜…β˜†β˜†2025β†’ Residue 561
NM_003722.5(TP63):c.2032G>C (p.Glu678Gln)Likely pathogenic
Split hand-foot malformation 4
β˜…β˜…β˜†β˜†2025β†’ Residue 678
NM_003722.5(TP63):c.956G>A (p.Arg319His)Pathogenic
not provided|TP63-Related Spectrum Disorders|Split hand-foot malformation 4
β˜…β˜…β˜†β˜†2025β†’ Residue 319
NM_003722.5(TP63):c.1010G>A (p.Arg337Gln)Pathogenic
ADULT syndrome|TP63-Related Spectrum Disorders|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 337
NM_003722.5(TP63):c.727C>T (p.Arg243Trp)Pathogenic
Ectrodactyly, ectodermal dysplasia, and cleft lip-palate syndrome 3|not provided|TP63-Related Spectrum Disorders|Rapp-Hodgkin syndrome|8 conditions
β˜…β˜…β˜†β˜†2024β†’ Residue 243
NM_003722.5(TP63):c.1685T>C (p.Leu562Pro)Pathogenic
Ectrodactyly, ectodermal dysplasia, and cleft lip-palate syndrome 3|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 562
NM_003722.5(TP63):c.740A>G (p.His247Arg)Pathogenic
Ectrodactyly, ectodermal dysplasia, and cleft lip-palate syndrome 3|not provided|TP63-Related Spectrum Disorders|Ankyloblepharon-ectodermal defects-cleft lip/palate syndrome
β˜…β˜…β˜†β˜†2024β†’ Residue 247
NM_003722.5(TP63):c.1028G>A (p.Arg343Gln)Pathogenic
Ectrodactyly, ectodermal dysplasia, and cleft lip-palate syndrome 3|not provided|TP63-Related Spectrum Disorders|Inborn genetic diseases|8 conditions|Split hand-foot malformation 4
β˜…β˜…β˜†β˜†2024β†’ Residue 343
NM_003722.5(TP63):c.1061C>A (p.Ala354Glu)Likely pathogenic
TP63-Related Spectrum Disorders|Split hand-foot malformation 4
β˜…β˜…β˜†β˜†2024β†’ Residue 354
NM_003722.5(TP63):c.1769C>T (p.Pro590Leu)Likely pathogenic
TP63-Related Spectrum Disorders|TP63-related disorder|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 590
View on ClinVar β†—
Related Genes
CDKN2AProtein interaction100%EP300Protein interaction100%SFNProtein interaction99%PERPProtein interaction93%GABPB1Protein interaction90%ITCHProtein interaction89%
Tissue Expression6 tissues
Heart
100%
Lung
82%
Liver
28%
Ovary
19%
Bone Marrow
14%
Brain
10%
Gene Interaction Network
Click a node to explore
TP63CDKN2AEP300SFNPERPGABPB1ITCH
PROTEIN STRUCTURE
Preparing viewer…
PDB2Y9U Β· 1.60 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.30Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.20 [0.13–0.30]
RankingsWhere TP63 stands among ~20K protein-coding genes
  • #173of 20,598
    Most Researched965 Β· top 1%
  • #603of 5,498
    Most Pathogenic Variants128 Β· top quartile
  • #1,106of 17,882
    Most Constrained (LOEUF)0.30 Β· top 10%
Genes detectedTP63
Sources retrieved50 papers
Response timeβ€”
πŸ“„ Sources
50β–Ό
1
p63.
PMID: 11733180
Int J Biochem Cell Biol Β· 2002
1.00
2
The TDP-43/TP63 Positive Feedback Circuit Promotes Esophageal Squamous Cell Carcinoma Progression.
PMID: 39023169
Adv Sci (Weinh) Β· 2024
0.90
3
p63-associated disorders.
PMID: 17224651
Cell Cycle Β· 2007
0.90
4
TP63 transcriptionally regulates SLC7A5 to suppress ferroptosis in head and neck squamous cell carcinoma.
PMID: 39234254
Front Immunol Β· 2024
0.84
5
TP63 as a modulator of ferroptosis in TP53 mutations glioblastoma.
PMID: 40796737
Cell Death Dis Β· 2025
0.82