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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
TPK1
thiamin pyrophosphokinase 1
Chromosome 7 Β· 7q35
NCBI Gene: 27010Ensembl: ENSG00000196511.15HGNC: HGNC:17358UniProt: A0A090N8Y0
43PubMed Papers
21Diseases
0Drugs
31Pathogenic Variants
FUNCTIONAL ROLE
Kinase
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
thiamine diphosphokinase activityprotein bindingidentical protein bindingUTP thiamine diphosphokinase activitychildhood encephalopathy due to thiamine pyrophosphokinase deficiencyLeigh syndromeplacenta praeviapyogenic granuloma
✦AI Summary

TPK1 (thiamin pyrophosphokinase 1) catalyzes the phosphorylation of thiamine to thiamine pyrophosphate (TPP), a critical cofactor for mitochondrial energy metabolism 1. The enzyme preferentially uses uridine 5'-triphosphate (UTP) as its phosphoryl donor, directly linking pyrimidine metabolism to TPP biosynthesis and vitamin B1 utilization 1. By generating TPP, TPK1 indirectly supports pyruvate dehydrogenase (PDH) activity and the tricarboxylic acid cycle, thereby maintaining pyruvate oxidation and de novo lipogenesis 1. While TPK1 can utilize ATP and CTP in vitro, these substrates show significantly lower efficiency without established physiological relevance 1. Mutations in TPK1 cause thiamine metabolism dysfunction syndrome 5 and episodic encephalopathy type, with thiamine supplementation (30 mg/kg/day) improving clinical outcomes 2. Lower TPK1 plasma levels are associated with increased Parkinson's disease risk, highlighting its role in neurological health 3. Deep intronic TPK1 variants can cause secondary pyruvate dehydrogenase complex deficiency through aberrant splicing 4. Additionally, common TPK1 intronic variants associate with birth weight variation in normal humans 5.

Sources cited
1
TPK1 catalyzes thiamine phosphorylation using UTP as preferred substrate to generate TPP; TPP regulates PDH activity and lipogenesis
PMID: 38547260
2
TPK1 mutations cause thiamine metabolism disorders; thiamine supplementation at 30 mg/kg/day improves outcomes
PMID: 27191787
3
Lower plasma TPK1 levels are risk factors for Parkinson's disease; TPK1 is a thiamine metabolism-related protein important for PD prediction
PMID: 40300504
4
Deep intronic TPK1 variants cause secondary pyruvate dehydrogenase complex deficiency through aberrant splicing
PMID: 40225937
5
Common intronic TPK1 variants associate with birth weight variation in human populations
PMID: 17295612
Disease Associationsβ“˜21
childhood encephalopathy due to thiamine pyrophosphokinase deficiencyOpen Targets
0.80Strong
Leigh syndromeOpen Targets
0.39Weak
placenta praeviaOpen Targets
0.35Weak
pyogenic granulomaOpen Targets
0.29Weak
ovarian neoplasmOpen Targets
0.29Weak
obesityOpen Targets
0.24Weak
joint diseaseOpen Targets
0.23Weak
self-injurious ideationOpen Targets
0.20Weak
chondrocalcinosisOpen Targets
0.20Weak
osteoarthritisOpen Targets
0.19Weak
genetic disorderOpen Targets
0.19Weak
dementiaOpen Targets
0.17Weak
Genu varumOpen Targets
0.17Weak
mixed connective tissue diseaseOpen Targets
0.17Weak
premature birthOpen Targets
0.17Weak
Genu valgumOpen Targets
0.17Weak
HypocalcemiaOpen Targets
0.17Weak
VertigoOpen Targets
0.17Weak
early-onset non-syndromic cataractOpen Targets
0.11Weak
Total congenital cataractOpen Targets
0.10Suggestive
Thiamine metabolism dysfunction syndrome 5, episodic encephalopathy typeUniProt
Pathogenic Variants31
NM_022445.4(TPK1):c.115+1G>TLikely pathogenic
Childhood encephalopathy due to thiamine pyrophosphokinase deficiency|not provided
β˜…β˜…β˜†β˜†2026
NM_022445.4(TPK1):c.501+4A>TPathogenic
not provided|Childhood encephalopathy due to thiamine pyrophosphokinase deficiency|Leigh syndrome
β˜…β˜…β˜†β˜†2025
NM_022445.4(TPK1):c.246C>A (p.Tyr82Ter)Pathogenic
Childhood encephalopathy due to thiamine pyrophosphokinase deficiency|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 82
NM_022445.4(TPK1):c.426G>C (p.Leu142Phe)Pathogenic
not provided|Childhood encephalopathy due to thiamine pyrophosphokinase deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 142
NM_022445.4(TPK1):c.44-2A>GPathogenic
not provided|Childhood encephalopathy due to thiamine pyrophosphokinase deficiency
β˜…β˜…β˜†β˜†2025
NM_022445.4(TPK1):c.185+1G>APathogenic
not provided|Childhood encephalopathy due to thiamine pyrophosphokinase deficiency
β˜…β˜…β˜†β˜†2025
NM_022445.4(TPK1):c.664G>C (p.Asp222His)Pathogenic
not provided|Childhood encephalopathy due to thiamine pyrophosphokinase deficiency
β˜…β˜…β˜†β˜†2023β†’ Residue 222
NM_022445.4(TPK1):c.1A>G (p.Met1Val)Pathogenic
Childhood encephalopathy due to thiamine pyrophosphokinase deficiency
β˜…β˜†β˜†β˜†2025β†’ Residue 1
NM_022445.4(TPK1):c.355-2A>GPathogenic
Childhood encephalopathy due to thiamine pyrophosphokinase deficiency
β˜…β˜†β˜†β˜†2024
NM_022445.4(TPK1):c.108G>A (p.Trp36Ter)Pathogenic
Childhood encephalopathy due to thiamine pyrophosphokinase deficiency
β˜…β˜†β˜†β˜†2024β†’ Residue 36
NM_022445.4(TPK1):c.181_182del (p.Glu61fs)Pathogenic
Childhood encephalopathy due to thiamine pyrophosphokinase deficiency
β˜…β˜†β˜†β˜†2024β†’ Residue 61
NM_022445.4(TPK1):c.116-2A>GLikely pathogenic
Childhood encephalopathy due to thiamine pyrophosphokinase deficiency
β˜…β˜†β˜†β˜†2024
NC_000007.14:g.(?_144591403)_(144591589_?)delLikely pathogenic
Childhood encephalopathy due to thiamine pyrophosphokinase deficiency
β˜…β˜†β˜†β˜†2024
NM_022445.4(TPK1):c.613+1G>CPathogenic
Childhood encephalopathy due to thiamine pyrophosphokinase deficiency
β˜…β˜†β˜†β˜†2023
NC_000007.14:g.(?_144682889)_(144682998_?)delPathogenic
Childhood encephalopathy due to thiamine pyrophosphokinase deficiency
β˜…β˜†β˜†β˜†2023
NM_022445.4(TPK1):c.224T>A (p.Ile75Asn)Likely pathogenic
Childhood encephalopathy due to thiamine pyrophosphokinase deficiency
β˜…β˜†β˜†β˜†2023β†’ Residue 75
NM_022445.4(TPK1):c.191dup (p.Leu64fs)Pathogenic
Childhood encephalopathy due to thiamine pyrophosphokinase deficiency
β˜…β˜†β˜†β˜†2023β†’ Residue 64
NM_022445.4(TPK1):c.565G>T (p.Gly189Ter)Pathogenic
Childhood encephalopathy due to thiamine pyrophosphokinase deficiency
β˜…β˜†β˜†β˜†2023β†’ Residue 189
NM_022445.4(TPK1):c.179_182del (p.Arg60fs)Likely pathogenic
Childhood encephalopathy due to thiamine pyrophosphokinase deficiency
β˜…β˜†β˜†β˜†2023β†’ Residue 60
NC_000007.14:g.(?_144623146)_(144682998_?)delPathogenic
Childhood encephalopathy due to thiamine pyrophosphokinase deficiency
β˜…β˜†β˜†β˜†2021
View on ClinVar β†—
Related Genes
TKTProtein interaction98%TKTL1Protein interaction98%TKTL2Protein interaction98%AK1Protein interaction92%AK5Protein interaction92%AK2Protein interaction91%
Tissue Expression6 tissues
Lung
100%
Heart
90%
Bone Marrow
59%
Liver
57%
Ovary
45%
Brain
44%
Gene Interaction Network
Click a node to explore
TPK1TKTTKTL1TKTL2AK1AK5AK2
PROTEIN STRUCTURE
Preparing viewer…
PDB3S4Y Β· 1.80 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.34LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.90 [0.62–1.34]
RankingsWhere TPK1 stands among ~20K protein-coding genes
  • #9,809of 20,598
    Most Researched43
  • #1,786of 5,498
    Most Pathogenic Variants31
  • #14,006of 17,882
    Most Constrained (LOEUF)1.34
Genes detectedTPK1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Multiomics-based molecular subtyping based on the commensal microbiome predicts molecular characteristics and the therapeutic response in breast cancer.
PMID: 38730464
Mol Cancer Β· 2024
1.00
2
Pyrimidines maintain mitochondrial pyruvate oxidation to support de novo lipogenesis.
PMID: 38547260
Science Β· 2024
0.90
3
Effect of genetic variants in
PMID: 37415797
Forensic Sci Res Β· 2023
0.80
4
Treatment of genetic defects of thiamine transport and metabolism.
PMID: 27191787
Expert Rev Neurother Β· 2016
0.70
5
Three common intronic variants in the maternal and fetal thiamine pyrophosphokinase gene (TPK1) are associated with birth weight.
PMID: 17295612
Ann Hum Genet Β· 2007
0.60