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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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TRAPPC3
trafficking protein particle complex subunit 3
Chromosome 1 · 1p34.3
NCBI Gene: 27095Ensembl: ENSG00000054116.12HGNC: HGNC:19942UniProt: A0A087WWM0
69PubMed Papers
20Diseases
0Drugs
1Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingTRAPP complexintra-Golgi vesicle-mediated transportguanyl-nucleotide exchange factor activityneurodegenerative diseaseopen-angle glaucomalysosomal storage diseasemultiple sclerosis
✦AI Summary

TRAPPC3 (trafficking protein particle complex subunit 3) is a component of the evolutionarily conserved TRAPP (Transport Protein Particle) complex that functions as a key regulator of vesicular trafficking pathways. As a core subunit of TRAPP complexes, TRAPPC3 facilitates endoplasmic reticulum-to-Golgi transport by participating in vesicle tethering and guanyl-nucleotide exchange factor activity 1. The protein is essential for proper trafficking of various cargo proteins, including different collagen types, where it works alongside other factors like SAR1, TANGO1, and SLY1/SCFD1 1. TRAPPC3 physically interacts with other TRAPP subunits, particularly TRAPPC6B, and this interaction is crucial for TRAPP II complex stability and function 2. Disruption of TRAPPC3-TRAPPC6B interactions leads to reduced TRAPP complex integrity and impaired Golgi trafficking 2. The protein shows structural similarity to BET3, another TRAPP subunit, suggesting potential heterodimerization capabilities 3. TRAPPC3 has been identified as a candidate gene in ciliopathy disorders, highlighting its potential role in ciliary function 4. Additionally, TRAPPC3 expression is regulated by hypoxia and NRF-1 transcription factor, suggesting involvement in cellular stress responses and neurite outgrowth 56.

Sources cited
1
TRAPPC3 is required for ER-to-Golgi trafficking of procollagen X and works with SAR1, TANGO1, and SLY1/SCFD1
PMID: 39245571
2
TRAPPC3 physically interacts with TRAPPC6B and is essential for TRAPP II complex stability
PMID: 37713627
3
TRAPPC3 (TPC6) has structural similarity to BET3 and forms dimers with alpha/beta-plait topology
PMID: 16025134
4
TRAPPC3 is identified as a novel candidate gene in ciliopathies
PMID: 27894351
5
TRAPPC3 expression is down-regulated by hypoxia in glioma cells
PMID: 29227074
6
TRAPPC3 is regulated by NRF-1 transcription factor and involved in neurite outgrowth
PMID: 23219993
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.55Moderate
open-angle glaucomaOpen Targets
0.40Moderate
Alzheimer diseaseOpen Targets
0.33Weak
lysosomal storage diseaseOpen Targets
0.33Weak
multiple sclerosisOpen Targets
0.33Weak
Parkinson diseaseOpen Targets
0.33Weak
Bardet-Biedl syndromeOpen Targets
0.26Weak
glaucomaOpen Targets
0.20Weak
sleep apneaOpen Targets
0.16Weak
colitisOpen Targets
0.01Suggestive
hepatocellular carcinomaOpen Targets
0.01Suggestive
ataxia telangiectasiaOpen Targets
0.01Suggestive
congenital rubellaOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.00Suggestive
ciliopathyOpen Targets
0.00Suggestive
metastatic melanomaOpen Targets
0.00Suggestive
AnxietyOpen Targets
0.00Suggestive
Neurodevelopmental disorderOpen Targets
0.00Suggestive
cholangiocarcinomaOpen Targets
0.00Suggestive
esophageal cancerOpen Targets
0.00Suggestive
Pathogenic Variants1
NM_014408.5(TRAPPC3):c.184C>T (p.Arg62Trp)Likely pathogenic
Bardet-Biedl syndrome
☆☆☆☆→ Residue 62
View on ClinVar ↗
Related Genes
RAB1AProtein interaction100%STX5Protein interaction100%TRAPPC14Protein interaction100%NAPAProtein interaction96%SAR1BProtein interaction95%TRAPPC5Protein interaction94%
Tissue Expression6 tissues
Heart
100%
Liver
98%
Lung
95%
Brain
91%
Ovary
65%
Bone Marrow
57%
Gene Interaction Network
Click a node to explore
TRAPPC3RAB1ASTX5TRAPPC14NAPASAR1BTRAPPC5
PROTEIN STRUCTURE
Preparing viewer…
PDB1SZ7 · 1.55 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.63LoF Tolerant
pLIⓘ
0.85Intermediate
Observed/Expected LoF0.27 [0.13–0.63]
RankingsWhere TRAPPC3 stands among ~20K protein-coding genes
  • #6,859of 20,598
    Most Researched69
  • #5,007of 5,498
    Most Pathogenic Variants1
  • #4,395of 17,882
    Most Constrained (LOEUF)0.63 · top quartile
Genes detectedTRAPPC3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Characterizing the morbid genome of ciliopathies.
PMID: 27894351
Genome Biol · 2016
1.00
2
TRAPPC6B biallelic variants cause a neurodevelopmental disorder with TRAPP II and trafficking disruptions.
PMID: 37713627
Brain · 2024
0.90
3
Visualization of ER-to-Golgi trafficking of procollagen X.
PMID: 39245571
Cell Struct Funct · 2024
0.80
4
Hypoxic regulation of the expression of cell proliferation related genes in U87 glioma cells upon inhibition of ire1 signaling enzyme.
PMID: 29227074
Ukr Biochem J · 2016
0.70
5
Novel genes that mediate nuclear respiratory factor 1-regualted neurite outgrowth in neuroblastoma IMR-32 cells.
PMID: 23219993
Gene · 2013
0.60