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9 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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TRPT1
tRNA phosphotransferase 1
Chromosome 11 · 11q13.1
NCBI Gene: 83707Ensembl: ENSG00000149743.14HGNC: HGNC:20316UniProt: F5H6B6
24PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
tRNA 2'-phosphotransferase activitytRNA splicing, via endonucleolytic cleavage and ligationtransferase activitybipolar disordersmoking cessationskin diseaseseborrheic keratosis
✦AI Summary

TRPT1 (tRNA phosphotransferase 1) is a bifunctional enzyme with dual catalytic activities. Its canonical function involves catalyzing the final step of tRNA splicing by transferring the 2'-phosphate from ligated tRNA to NAD+, producing ADP-ribose 1''-2'' cyclic phosphate 1. The human TRPT1 gene, located at chromosome 11, encodes a 253-amino acid protein conserved across eukaryotes and bacteria 1. Beyond tRNA processing, TRPT1 functions as an ADP-ribosyltransferase capable of modifying nucleic acids. It ADP-ribosylates phosphorylated ends of both RNA and DNA, representing a novel non-canonical RNA capping mechanism 2. This modification is reversible through ADP-ribosylhydrolases including PARG, TARG1, MACROD1/2, and ARH3 3. Structural studies reveal that TRPT1 employs distinct catalytic residues for tRNA 2'-phosphotransferase versus ADP-ribosylation activities, with flexibility in nucleic acid substrate binding 4. Clinically, TRPT1 has emerged as a bipolar disorder risk gene through fine-mapping genome-wide association studies 5, suggesting involvement in neurotransmission or neurodevelopment. Evidence indicates mammalian TRPT1 promotes HeLa cell survival and proliferation 4. The physiological significance of nucleic acid ADP-ribosylation likely encompasses DNA repair, antiviral immunity, and cellular stress responses 6.

Sources cited
1
TRPT1 is the human homolog of yeast TPT1, catalyzes 2'-phosphate removal from ligated tRNA, located at chromosome 11q13, encodes 253 amino acids, and is conserved across organisms
PMID: 14504659
2
TRPT1 functions as an ADP-ribosyltransferase that ADP-ribosylates phosphorylated RNA ends, and this modification is reversed by cellular ADP-ribosylhydrolases
PMID: 31216043
3
TRPT1 adds ADP-ribose to 5'-phosphorylated ends of single-stranded RNA, representing a novel RNA capping mechanism
PMID: 34116477
4
TRPT1 employs different catalytic residues for tRNA 2'-phosphotransferase versus nucleic acid ADP-ribosylation activities, and promotes mammalian HeLa cell survival and proliferation
PMID: 37334830
5
TRPT1 was identified as a bipolar disorder risk gene through fine-mapping studies, suggesting involvement in neurotransmission or neurodevelopment
PMID: 38405768
6
TRPT1-mediated nucleic acid ADP-ribosylation may function in DNA damage repair, antiviral immunity, or as non-conventional RNA cap
PMID: 33693930
Disease Associationsⓘ20
bipolar disorderOpen Targets
0.15Weak
smoking cessationOpen Targets
0.07Suggestive
skin diseaseOpen Targets
0.05Suggestive
seborrheic keratosisOpen Targets
0.02Suggestive
systemic juvenile idiopathic arthritisOpen Targets
0.01Suggestive
cancerOpen Targets
0.00Suggestive
cervical squamous cell carcinomaOpen Targets
0.00Suggestive
cervical cancerOpen Targets
0.00Suggestive
colon adenocarcinomaOpen Targets
0.00Suggestive
colorectal adenocarcinomaOpen Targets
0.00Suggestive
esophageal cancerOpen Targets
0.00Suggestive
gastric cancerOpen Targets
0.00Suggestive
glioma susceptibility 1Open Targets
0.00Suggestive
lung cancerOpen Targets
0.00Suggestive
melanomaOpen Targets
0.00Suggestive
ovarian serous cystadenocarcinomaOpen Targets
0.00Suggestive
sarcomaOpen Targets
0.00Suggestive
thyroid cancer, nonmedullary, 1Open Targets
0.00Suggestive
Uterine CarcinosarcomaOpen Targets
0.00Suggestive
uterine corpus endometrial carcinomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
FAM98BShared pathway100%NUDT22Protein interaction86%PARP10Protein interaction74%TSEN34Shared pathway50%TSEN15Shared pathway50%TSEN54Shared pathway50%
Tissue Expression6 tissues
Heart
100%
Liver
75%
Ovary
55%
Lung
50%
Brain
31%
Bone Marrow
17%
Gene Interaction Network
Click a node to explore
TRPT1FAM98BNUDT22PARP10TSEN34TSEN15TSEN54
PROTEIN STRUCTURE
Preparing viewer…
PDB7YW3 · 2.50 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.23LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.87 [0.62–1.23]
RankingsWhere TRPT1 stands among ~20K protein-coding genes
  • #13,339of 20,598
    Most Researched24
  • #12,934of 17,882
    Most Constrained (LOEUF)1.23
Genes detectedTRPT1
Sources retrieved9 papers
Response time—
📄 Sources
9▼
1
Reversible ADP-ribosylation of RNA.
PMID: 31216043
Nucleic Acids Res · 2019
1.00
2
ADP-ribosylation of DNA and RNA.
PMID: 34116477
DNA Repair (Amst) · 2021
0.89
3
Fine-mapping genomic loci refines bipolar disorder risk genes.
PMID: 38405768
medRxiv · 2024
0.78
4
A human homolog of the yeast gene encoding tRNA 2'-phosphotransferase: cloning, characterization and complementation analysis.
PMID: 14504659
Cell Mol Life Sci · 2003
0.67
5
ADP-ribosylation of RNA and DNA: from in vitro characterization to in vivo function.
PMID: 33693930
Nucleic Acids Res · 2021
0.56