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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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UBE2QL1
ubiquitin conjugating enzyme E2 QL1
Chromosome 5 · 5p15.31
NCBI Gene: 134111Ensembl: ENSG00000215218.4HGNC: HGNC:37269UniProt: A1L167
9PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleoplasmubiquitin conjugating enzyme activityprotein bindingnucleus
✦AI Summary

UBE2QL1 is a ubiquitin-conjugating enzyme (E2 ligase) that catalyzes protein ubiquitination through its active-site cysteine residue 1. The protein functions in multiple cellular contexts: it interacts with the F-box protein FBXW7 to facilitate degradation of oncogenic substrates including CCNE1 and mTOR 1, and coordinates lysophagy—the selective autophagic clearance of damaged lysosomes 2. Upon lysosomal membrane permeabilization, UBE2QL1 translocates to damaged lysosomes where it promotes ubiquitination of lysosomal proteins, recruits the autophagy receptor p62 and the AAA-ATPase VCP/p97, and facilitates LC3B-mediated autophagosome formation 2. UBE2QL1 is essential for lysosomal homeostasis; its depletion increases basal lysosomal damage and impairs TFEB activation 2. Recent evidence indicates UBE2QL1 also participates in linear ubiquitination at damaged lysosomes to activate NF-κB signaling and promote cell survival 3. Clinically, UBE2QL1 acts as a renal tumor suppressor: it is disrupted by constitutional translocation in familial renal cell carcinoma and downregulated in 78.6% of sporadic cases through deletions and promoter hypermethylation 1. Its reexpression suppresses anchorage-independent growth in RCC cell lines 1. UBE2QL1 hypermethylation also associates with poor prognosis in clear cell RCC and hepatocellular carcinoma, suggesting broader cancer relevance 45.

Sources cited
1
UBE2QL1 is an E2 ubiquitin conjugating enzyme with active-site cysteine that interacts with FBXW7 and facilitates degradation of CCNE1 and mTOR; disrupted in familial RCC and downregulated in 78.6% of sporadic RCC
PMID: 24000165
2
UBE2QL1 coordinates lysophagy by promoting lysosomal ubiquitination, recruiting p62 and VCP/p97, facilitating LC3B autophagosome association, and maintaining lysosomal homeostasis
PMID: 31432621
3
UBE2QL1 participates in linear ubiquitination at damaged lysosomes to activate NF-κB signaling and promote cell survival during lysosomal damage
PMID: 39744815
4
UBE2QL1 is among 13 optimal differentially methylated genes in a prognostic risk score system for clear cell RCC
PMID: 31952997
5
UBE2QL1 is one of nine prognostic mRNAs in a methylation-based risk score model for predicting ccRCC patient prognosis
PMID: 33510822
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
MKRN3Shared pathway100%DZIP3Shared pathway100%UBOX5Shared pathway100%MKRN1Shared pathway100%RUSC1Shared pathway100%IRF2BP1Shared pathway100%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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UBE2QL1MKRN3DZIP3UBOX5MKRN1RUSC1IRF2BP1
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt A1L167
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.89LoF Tolerant
pLIⓘ
0.28Tolerant
Observed/Expected LoF0.42 [0.22–0.89]
RankingsWhere UBE2QL1 stands among ~20K protein-coding genes
  • #17,492of 20,598
    Most Researched9
  • #7,934of 17,882
    Most Constrained (LOEUF)0.89
Genes detectedUBE2QL1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
PMID: 31679434
1.00
2
Linear ubiquitination at damaged lysosomes induces local NFKB activation and controls cell survival.
PMID: 39744815
Autophagy · 2025
0.90
3
UBE2QL1 is disrupted by a constitutional translocation associated with renal tumor predisposition and is a novel candidate renal tumor suppressor gene.
PMID: 24000165
Hum Mutat · 2013
0.80
4
The ubiquitin-conjugating enzyme UBE2QL1 coordinates lysophagy in response to endolysosomal damage.
PMID: 31432621
EMBO Rep · 2019
0.70
5
Whole-genome DNA methylation and hydroxymethylation profiling for HBV-related hepatocellular carcinoma.
PMID: 27221337
Int J Oncol · 2016
0.60