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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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USE1
unconventional SNARE in the ER 1
Chromosome 19 · 19p13.11
NCBI Gene: 55850Ensembl: ENSG00000053501.15HGNC: HGNC:30882UniProt: Q9NZ43
67PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingendoplasmic reticulumSNAP receptor activityretrograde vesicle-mediated transport, Golgi to endoplasmic reticulumneurodegenerative diseaseinfectionlung cancernervous system benign neoplasm
✦AI Summary

USE1 (unconventional SNARE in the ER 1) is a bispecific E2 ubiquitin-conjugating enzyme that functions as the dedicated partner of the E1 enzyme UBA6 in intracellular protein modification pathways. Mechanistically, USE1 recognizes a polyalanine stretch within UBA6 and mediates the transfer of both ubiquitin and the ubiquitin-like modifier FAT10 to target proteins 1. This UBA6-USE1 axis plays critical roles in retrograde Golgi-to-ER transport and STING trafficking regulation, where USE1 loss enhances STING signaling by modulating intracellular transport dynamics 2. USE1 undergoes auto-FAT10ylation as a negative feedback mechanism to limit FAT10 conjugation through proteasomal degradation 3, though under inflammatory TNF conditions, FAT10 conjugation can proceed through alternative E2 enzymes independently of USE1 4. Clinically, USE1 is frequently overexpressed in lung cancer, where it promotes tumor progression 5. RNA interference-based targeting of USE1 effectively suppresses lung cancer cell proliferation, migration, and invasion through G1 cell cycle arrest and apoptosis induction 65. These findings establish USE1 as both a fundamental regulator of vesicular trafficking and ubiquitin-like modification, and as a promising therapeutic target for lung cancer treatment.

Sources cited
1
USE1 is recognized by UBA6 through a polyalanine stretch and mediates ubiquitin and FAT10 transfer to target proteins including E6AP
PMID: 38177505
2
USE1 is involved in Golgi-to-ER transport and its loss enhances STING signaling by affecting intracellular trafficking
PMID: 39657680
3
USE1 undergoes auto-FAT10ylation as a negative feedback mechanism to limit FAT10 conjugation and is degraded by the proteasome
PMID: 24528925
4
Under inflammatory TNF conditions, FAT10 conjugation can occur independently of USE1 through alternative E2 enzymes
PMID: 37604583
5
USE1 is frequently overexpressed in lung cancer and USE1 silencing suppresses tumor growth through cell cycle arrest and apoptosis
PMID: 36644959
6
USE1 knockdown via RNA interference inhibits lung cancer tumor growth in vitro and in vivo through cell cycle arrest and apoptosis
PMID: 31791842
7
USE1 is the dedicated E2 enzyme for the UBA6-USE1 bispecific pathway that activates and transfers both ubiquitin and FAT10
PMID: 31067743
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.52Moderate
infectionOpen Targets
0.04Suggestive
lung cancerOpen Targets
0.03Suggestive
nervous system benign neoplasmOpen Targets
0.02Suggestive
jaw diseaseOpen Targets
0.02Suggestive
cancerOpen Targets
0.02Suggestive
Pathologic fractureOpen Targets
0.02Suggestive
gliomaOpen Targets
0.02Suggestive
neoplasmOpen Targets
0.02Suggestive
autoimmune lymphoproliferative syndrome type 2BOpen Targets
0.02Suggestive
Autoimmune lymphoproliferative syndrome with recurrent viral infectionsOpen Targets
0.02Suggestive
diabetes mellitusOpen Targets
0.01Suggestive
Neoplasm of the lungOpen Targets
0.01Suggestive
systemic juvenile idiopathic arthritisOpen Targets
0.01Suggestive
HIV infectionOpen Targets
0.01Suggestive
HIV-1 infectionOpen Targets
0.01Suggestive
colorectal cancerOpen Targets
0.00Suggestive
malariaOpen Targets
0.00Suggestive
nasopharyngeal carcinomaOpen Targets
0.00Suggestive
non-small cell lung carcinomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
SNAP23Protein interaction100%STX6Protein interaction100%STX1AProtein interaction100%STX4Protein interaction100%VTI1AProtein interaction100%STX16Protein interaction100%
Tissue Expression6 tissues
Liver
100%
Ovary
77%
Lung
72%
Brain
69%
Heart
65%
Bone Marrow
61%
Gene Interaction Network
Click a node to explore
USE1SNAP23STX6STX1ASTX4VTI1ASTX16
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q9NZ43
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.19LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.88 [0.67–1.19]
RankingsWhere USE1 stands among ~20K protein-coding genes
  • #7,030of 20,598
    Most Researched67
  • #12,462of 17,882
    Most Constrained (LOEUF)1.19
Genes detectedUSE1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
The power of genetic diversity in genome-wide association studies of lipids.
PMID: 34887591
Nature · 2021
1.00
2
Disease-associated polyalanine expansion mutations impair UBA6-dependent ubiquitination.
PMID: 38177505
EMBO J · 2024
0.90
3
UBA6 and Its Bispecific Pathways for Ubiquitin and FAT10.
PMID: 31067743
Int J Mol Sci · 2019
0.80
4
Tumor necrosis factor mediates USE1-independent FAT10ylation under inflammatory conditions.
PMID: 37604583
Life Sci Alliance · 2023
0.70
5
Classification and functional characterization of regulators of intracellular STING trafficking identified by genome-wide optical pooled screening.
PMID: 39657680
Cell Syst · 2024
0.60