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GeneE
25 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
USH2A
usherin
Chromosome 1 Β· 1q41
NCBI Gene: 7399Ensembl: ENSG00000042781.14HGNC: HGNC:12601UniProt: O75445
164PubMed Papers
22Diseases
0Drugs
2,114Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
maintenance of animal organ identitycytoplasmsensory perception of light stimulusinner ear receptor cell differentiationUsher syndrome type 2Aretinitis pigmentosaUsher syndrome type 2Usher syndrome
✦AI Summary

USH2A encodes usherin, a component of the USH2 complex essential for sensory function. In the inner ear, USH2A maintains hair bundle ankle links that connect developing stereocilia in cochlear hair cells, supporting hearing function 1. In retinal photoreceptors, it maintains the periciliary membrane complex, regulating intracellular protein transport and supporting vision 2. USH2A mutations cause two clinically distinct inherited retinal diseases: Usher syndrome type 2 (USH2), characterized by combined deafness and progressive blindness, and non-syndromic retinitis pigmentosa (RP) with vision loss alone 3. Genotype-phenotype analysis reveals that biallelic truncating variants correlate with earlier symptom onset and more severe visual decline than missense variants 4. USH2A is among the most frequently mutated genes in inherited retinal disease globally, accounting for 11-15.75% of molecularly diagnosed IRD cases 54. Population-specific hotspot variants predominate, including p.Cys934Trp in non-syndromic RP and c.8559-2A>G in USH2 67. CNV detection increases diagnostic yield, identifying pathogenic variants in an additional 8.8% of IRD patients 8. These findings enable precise genetic diagnosis and inform therapeutic development strategies.

Sources cited
1
USH2A is among the 5 most common genes causing inherited retinal disease; exon 13 variants identified in 43% of USH2A-associated IRD cases
PMID: 38219857
2
USH2A is the second most frequently mutated gene in IRD, accounting for 11.2% of solved cases in a large Italian cohort
PMID: 36460718
3
USH2A mutations cause both non-syndromic RP and Usher syndrome type II; patients with biallelic truncating variants show earlier symptom onset and younger age of visual decline than those with missense variants
PMID: 32675063
4
USH2A variants, particularly p.Cys934Trp and p.Gly2752Arg, are among the most common East Asian-specific variants causing RP in Japanese patients
PMID: 31213501
5
USH2A mutations account for 67.7% of USH2 families; c.8559-2A>G is the most frequent USH2A mutation, representing 19.1% of identified alleles in Chinese USH2 patients
PMID: 29625443
6
USH2A ranks among the top causative genes for deafness, following GJB2, SLC26A4, and others, contributing significantly to hearing loss etiology
PMID: 23967202
7
USH2A mutation prevalence is 15.75% in inherited retinal disease cohorts; hotspot mutations include c.8559-2A>G and c.2802T>G; missense variants show less severe consequences in RP, while truncating variants are associated with earlier USH2 onset
PMID: 32188678
8
USH2A pathogenic variants occur in 11.6% of IRD subjects; CNV detection identifies additional disease-causing variants in 8.8% of patients, increasing diagnostic yield
PMID: 32037395
Disease Associationsβ“˜22
Usher syndrome type 2AOpen Targets
0.84Strong
retinitis pigmentosaOpen Targets
0.84Strong
Usher syndrome type 2Open Targets
0.69Moderate
Usher syndromeOpen Targets
0.68Moderate
Retinal dystrophyOpen Targets
0.59Moderate
retinopathyOpen Targets
0.58Moderate
Rare genetic deafnessOpen Targets
0.56Moderate
genetic disorderOpen Targets
0.53Moderate
Abnormality of the earOpen Targets
0.51Moderate
ear malformationOpen Targets
0.51Moderate
Cone rod dystrophyOpen Targets
0.50Moderate
cone-rod dystrophyOpen Targets
0.50Moderate
Hearing impairmentOpen Targets
0.50Moderate
autosomal recessive retinitis pigmentosaOpen Targets
0.50Moderate
autosomal dominant nonsyndromic hearing lossOpen Targets
0.46Moderate
nonsyndromic genetic hearing lossOpen Targets
0.46Moderate
autosomal dominant nonsyndromic hearing loss 36Open Targets
0.43Moderate
Congenital sensorineural hearing impairmentOpen Targets
0.42Moderate
Posterior column ataxia - retinitis pigmentosaOpen Targets
0.41Moderate
deafnessOpen Targets
0.40Moderate
Retinitis pigmentosa 39UniProt
Usher syndrome 2AUniProt
Pathogenic Variants2,114
NM_206933.4(USH2A):c.5857+2T>CLikely pathogenic
Rare genetic deafness|Retinitis pigmentosa 39|not provided|Usher syndrome|Retinal dystrophy|Usher syndrome type 2A
β˜…β˜…β˜…β˜†2025
NM_206933.4(USH2A):c.13808A>C (p.His4603Pro)Likely pathogenic
not specified|Retinitis pigmentosa 39;Usher syndrome type 2A|Retinal dystrophy|Usher syndrome|not provided
β˜…β˜…β˜…β˜†2024β†’ Residue 4603
NM_206933.4(USH2A):c.11713C>T (p.Arg3905Cys)Pathogenic
Retinal dystrophy|not provided|Usher syndrome type 2A;Retinitis pigmentosa 39|Usher syndrome|Usher syndrome type 2A|Retinitis pigmentosa 39|Retinitis pigmentosa|USH2A-related disorder
β˜…β˜…β˜…β˜†2024β†’ Residue 3905
NM_206933.4(USH2A):c.14219C>A (p.Ala4740Asp)Pathogenic
not provided|Retinal dystrophy|Retinitis pigmentosa|Usher syndrome|Retinal degeneration;Retinal dystrophy|Retinitis pigmentosa 39|Retinitis pigmentosa 39;Usher syndrome type 2A|Usher syndrome type 2A
β˜…β˜…β˜…β˜†2024β†’ Residue 4740
NM_206933.4(USH2A):c.12874A>G (p.Asn4292Asp)Likely pathogenic
not specified|Retinitis pigmentosa|Retinal dystrophy|not provided|Usher syndrome type 2A|Retinitis pigmentosa 39|Retinitis pigmentosa 39;Usher syndrome type 2A
β˜…β˜…β˜…β˜†2024β†’ Residue 4292
NM_206933.4(USH2A):c.5012G>A (p.Gly1671Asp)Pathogenic
not specified|Retinitis pigmentosa|not provided|Usher syndrome|Retinal dystrophy|USH2A-related disorder|Retinitis pigmentosa 39|Retinitis pigmentosa 39;Usher syndrome type 2A|Usher syndrome type 2A
β˜…β˜…β˜…β˜†2024β†’ Residue 1671
NM_206933.4(USH2A):c.12574C>T (p.Arg4192Cys)Likely pathogenic
not provided|Retinitis pigmentosa|Retinitis pigmentosa 39|Retinitis pigmentosa 39;Usher syndrome type 2A|Retinal dystrophy|Usher syndrome|Usher syndrome type 2A|Monogenic hearing loss
β˜…β˜…β˜…β˜†2023β†’ Residue 4192
NM_206933.4(USH2A):c.2081G>A (p.Cys694Tyr)Likely pathogenic
not provided|Usher syndrome|Retinitis pigmentosa 39|Retinal dystrophy|Usher syndrome type 2A;Retinitis pigmentosa 39|Usher syndrome type 2A
β˜…β˜…β˜…β˜†2023β†’ Residue 694
NM_206933.4(USH2A):c.1859G>T (p.Cys620Phe)Pathogenic
Retinitis pigmentosa 39;Usher syndrome type 2A|Usher syndrome type 2A|Usher syndrome|not provided|USH2A-related disorder|Retinitis pigmentosa 39
β˜…β˜…β˜…β˜†2023β†’ Residue 620
NM_206933.4(USH2A):c.5516T>A (p.Val1839Glu)Likely pathogenic
Usher syndrome type 2A|Retinitis pigmentosa 39|Retinal dystrophy|Usher syndrome|not provided
β˜…β˜…β˜…β˜†2023β†’ Residue 1839
NM_206933.4(USH2A):c.3407G>A (p.Ser1136Asn)Pathogenic
Usher syndrome type 2A|Retinitis pigmentosa 39;Usher syndrome type 2A|Cone-rod dystrophy|Usher syndrome|not provided
β˜…β˜…β˜…β˜†2023β†’ Residue 1136
NM_206933.3(USH2A):c.12295-?_14133+?delLikely pathogenic
Rare genetic deafness|Usher syndrome|not provided
β˜…β˜…β˜…β˜†2023
NM_206933.4(USH2A):c.3547_3548del (p.Ile1183fs)Likely pathogenic
Usher syndrome type 2A|Retinitis pigmentosa 39|Rare genetic deafness|Usher syndrome|not provided
β˜…β˜…β˜…β˜†2022β†’ Residue 1183
NM_206933.4(USH2A):c.12295-3T>APathogenic
not specified|not provided|Retinitis pigmentosa 39|Usher syndrome|Retinal dystrophy|Retinitis pigmentosa|Retinitis pigmentosa 39;Usher syndrome type 2A|Usher syndrome type 2A
β˜…β˜…β˜…β˜†2022
NM_206933.4(USH2A):c.956G>A (p.Cys319Tyr)Pathogenic
Usher syndrome type 2A|not provided|Usher syndrome|Retinal dystrophy|Rare genetic deafness|Retinitis pigmentosa 39|Usher syndrome type 2A;Retinitis pigmentosa 39
β˜…β˜…β˜…β˜†2022β†’ Residue 319
NM_206933.4(USH2A):c.2276G>T (p.Cys759Phe)Pathogenic
Retinitis pigmentosa 39|Retinitis pigmentosa|Usher syndrome type 2A|not provided|Retinal dystrophy|Usher syndrome|USH2A-related disorder|Inborn genetic diseases|Autosomal recessive retinitis pigmentosa|Ear malformation|See cases|Usher syndrome type 2A;Retinitis pigmentosa 39
β˜…β˜…β˜…β˜†2019β†’ Residue 759
NM_206933.4(USH2A):c.8559-2A>GPathogenic
Usher syndrome type 2A|Retinitis pigmentosa|not provided|Usher syndrome|Retinitis pigmentosa 39;Usher syndrome type 2A|Rare genetic deafness|Retinal dystrophy|Retinitis pigmentosa 39
β˜…β˜…β˜…β˜†2018
NM_206933.4(USH2A):c.4338_4339del (p.Cys1447fs)Pathogenic
Usher syndrome type 2A|USH2A-related disorder|not provided|Retinal dystrophy|Usher syndrome|Retinitis pigmentosa 39|Usher syndrome type 2A;Retinitis pigmentosa 39
β˜…β˜…β˜…β˜†2018β†’ Residue 1447
NM_206933.4(USH2A):c.8682-9A>GPathogenic
not provided|Usher syndrome|Retinitis pigmentosa 39|Retinal dystrophy|Retinitis pigmentosa|Usher syndrome type 2A|USH2A-related disorder
β˜…β˜…β˜…β˜†2018
NM_206933.4(USH2A):c.11241C>A (p.Tyr3747Ter)Pathogenic
Rare genetic deafness|Usher syndrome|not provided|Usher syndrome type 2A|Retinitis pigmentosa 39|Retinitis pigmentosa 39;Usher syndrome type 2A
β˜…β˜…β˜…β˜†2018β†’ Residue 3747
View on ClinVar β†—
Related Genes
HM13Protein interaction100%RNF139Protein interaction93%LCA5Protein interaction93%NINLProtein interaction90%SLC4A7Protein interaction85%VEZTProtein interaction83%
Tissue Expression6 tissues
Liver
100%
Heart
17%
Brain
11%
Ovary
3%
Lung
1%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
USH2AHM13RNF139LCA5NINLSLC4A7VEZT
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt O75445
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.85LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.79 [0.73–0.85]
RankingsWhere USH2A stands among ~20K protein-coding genes
  • #2,743of 20,598
    Most Researched164 Β· top quartile
  • #12of 5,498
    Most Pathogenic Variants2,114 Β· top 1%
  • #7,449of 17,882
    Most Constrained (LOEUF)0.85
Genes detectedUSH2A
Sources retrieved25 papers
Response timeβ€”
πŸ“„ Sources
25β–Ό
1
Spectrum of Genetic Variants in the Most Common Genes Causing Inherited Retinal Disease in a Large Molecularly Characterized United Kingdom Cohort.
PMID: 38219857
Ophthalmol Retina Β· 2024
1.00
2
Genetic epidemiology of inherited retinal diseases in a large patient cohort followed at a single center in Italy.
PMID: 36460718
Sci Rep Β· 2022
0.90
3
PMID: 32675063
Br J Ophthalmol Β· 2021
0.80
4
Genetic characteristics of retinitis pigmentosa in 1204 Japanese patients.
PMID: 31213501
J Med Genet Β· 2019
0.70
5
Diverse Genetic Landscape of Suspected Retinitis Pigmentosa in a Large Korean Cohort.
PMID: 33946315
Genes (Basel) Β· 2021
0.68