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GeneE
25 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
VAPB
VAMP associated protein B and C
Chromosome 20 Β· 20q13.32
NCBI Gene: 9217Ensembl: ENSG00000124164.17HGNC: HGNC:12649UniProt: O95292
266PubMed Papers
22Diseases
0Drugs
2Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
RESEARCH IMPACT
Trending
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
endoplasmic reticulum exit siteprotein bindingmicrotubule bindingenzyme bindingamyotrophic lateral sclerosis type 8adult-onset proximal spinal muscular atrophy, autosomal dominantneurodegenerative diseaseamyotrophic lateral sclerosis, dominant
✦AI Summary

VAPB is an endoplasmic reticulum (ER)-anchored protein that serves multiple critical cellular functions through formation of membrane contact sites and protein interactions. Its primary function involves mediating ER-organelle contact sites, particularly with mitochondria and lysosomes, through interactions with FFAT motif-containing proteins 1 2. VAPB forms dynamic subdomains at ER-mitochondria contact sites (ERMCSs) that undergo rapid remodeling within seconds, allowing metabolic adaptation while maintaining stable long-term contacts 2. The protein plays a crucial role in lipid metabolism by forming complexes with ESYT1 and ESYT2 at lipid droplet-mitochondria-ER interfaces, facilitating fatty acid transfer for Ξ²-oxidation 3. Additionally, VAPB regulates cholesterol sensing by mTORC1 through ER-lysosome contacts, working with OSBP to deliver cholesterol for growth signaling activation 4. VAPB also functions as a negative regulator of STING-mediated innate immune responses, controlling type I interferon expression 5. Disease relevance includes amyotrophic lateral sclerosis (ALS), where the P56S mutation impairs contact site remodeling and enhances inappropriate immune activation 2 5. The protein's dysfunction contributes to aberrant mTORC1 signaling in Niemann-Pick type C disease 4. VAPB represents a critical hub for inter-organelle communication essential for cellular homeostasis.

Sources cited
1
VAPB is involved in mitochondria-associated ER membranes (MAMs) formation and function
PMID: 35314166
2
VAPB forms complexes with ESYT1/ESYT2 at lipid droplet-mitochondria-ER contacts for fatty acid transfer
PMID: 40032835
3
VAPB forms dynamic subdomains at ER-mitochondria contact sites with rapid molecular exchange
PMID: 38267577
4
VAPB enables cholesterol sensing by mTORC1 through ER-lysosome contacts and is dysregulated in Niemann-Pick type C
PMID: 31548609
5
VAPB negatively regulates STING-mediated innate immune signaling and ALS-associated P56S mutation affects this function
PMID: 41337593
Disease Associationsβ“˜22
amyotrophic lateral sclerosis type 8Open Targets
0.73Strong
adult-onset proximal spinal muscular atrophy, autosomal dominantOpen Targets
0.65Moderate
neurodegenerative diseaseOpen Targets
0.47Moderate
amyotrophic lateral sclerosis, dominantOpen Targets
0.42Moderate
amyotrophic lateral sclerosisOpen Targets
0.40Moderate
alcohol drinkingOpen Targets
0.34Weak
type 2 diabetes mellitusOpen Targets
0.29Weak
poisoningOpen Targets
0.28Weak
Crohn's diseaseOpen Targets
0.22Weak
genetic disorderOpen Targets
0.19Weak
MODYOpen Targets
0.11Weak
type 1 diabetes mellitusOpen Targets
0.10Suggestive
neoplasmOpen Targets
0.08Suggestive
medulloblastomaOpen Targets
0.08Suggestive
immune system diseaseOpen Targets
0.08Suggestive
breast cancerOpen Targets
0.07Suggestive
maturity-onset diabetes of the young type 2Open Targets
0.07Suggestive
maturity-onset diabetes of the young type 4Open Targets
0.07Suggestive
maturity-onset diabetes of the young type 6Open Targets
0.07Suggestive
cystic fibrosisOpen Targets
0.07Suggestive
Amyotrophic lateral sclerosis 8UniProt
Spinal muscular atrophy, proximal, adult, autosomal dominantUniProt
Pathogenic Variants2
NM_004738.5(VAPB):c.166C>T (p.Pro56Ser)Pathogenic
Amyotrophic lateral sclerosis type 8|not provided|Adult-onset proximal spinal muscular atrophy, autosomal dominant;Amyotrophic lateral sclerosis type 8|Adult-onset proximal spinal muscular atrophy, autosomal dominant
β˜…β˜…β˜†β˜†2025β†’ Residue 56
NM_004738.5(VAPB):c.137C>T (p.Thr46Ile)Pathogenic
Amyotrophic lateral sclerosis type 8|not provided
β˜†β˜†β˜†β˜†2010β†’ Residue 46
View on ClinVar β†—
Related Genes
FAF1Protein interaction100%BCAP31Protein interaction100%OSBPL9Protein interaction99%OSBPL10Protein interaction99%ATF6Protein interaction99%MFN2Protein interaction99%
Tissue Expression6 tissues
Brain
100%
Heart
47%
Liver
35%
Ovary
28%
Lung
22%
Bone Marrow
8%
Gene Interaction Network
Click a node to explore
VAPBFAF1BCAP31OSBPL9OSBPL10ATF6MFN2
PROTEIN STRUCTURE
Preparing viewer…
PDB3IKK Β· 2.50 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.70LoF Tolerant
pLIβ“˜
0.52Intermediate
Observed/Expected LoF0.37 [0.21–0.70]
RankingsWhere VAPB stands among ~20K protein-coding genes
  • #1,416of 20,598
    Most Researched266 Β· top 10%
  • #4,221of 5,498
    Most Pathogenic Variants2
  • #5,315of 17,882
    Most Constrained (LOEUF)0.70
Genes detectedVAPB
Sources retrieved25 papers
Response timeβ€”
πŸ“„ Sources
25β–Ό
1
Potential role of mitochondria-associated endoplasmic reticulum membrane proteins in diseases.
PMID: 35314166
Biochem Pharmacol Β· 2022
1.00
2
Proximity proteomics reveals a mechanism of fatty acid transfer at lipid droplet-mitochondria- endoplasmic reticulum contact sites.
PMID: 40032835
Nat Commun Β· 2025
0.90
3
Modulation of ER-mitochondria tethering complex VAPB-PTPIP51: Novel therapeutic targets for aging-associated diseases.
PMID: 38719161
Ageing Res Rev Β· 2024
0.80
4
Reticulophagy and viral infection.
PMID: 39394962
Autophagy Β· 2025
0.70
5
Cholesterol induction in CD8
PMID: 37919522
Cancer Immunol Immunother Β· 2023
0.60