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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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VMP1
vacuole membrane protein 1
Chromosome 17 · 17q23.1
NCBI Gene: 81671Ensembl: ENSG00000062716.13HGNC: HGNC:29559UniProt: B4DED7
94PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedTransporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingphospholipid scramblase activityautophagosome assemblyautophagyneurodegenerative diseasediabetes mellitustype 2 diabetes mellitusmuscle cramp
✦AI Summary

VMP1 (vacuole membrane protein 1) is an endoplasmic reticulum (ER)-localized transmembrane protein that functions as a phospholipid scramblase and regulates multiple cellular processes. VMP1 exhibits scramblase activity, controlling the distribution of cholesterol and phosphatidylserine across membranes 1. The protein plays essential roles in autophagosome formation by regulating ER-isolation membrane contacts through modulation of SERCA (sarco[endo]plasmic reticulum calcium ATPase) activity 2. VMP1 also controls cellular lipid and energy metabolism, including mitochondrial beta-oxidation and global metabolic regulation 3. Importantly, VMP1 serves as a crucial host factor required for infection by multiple RNA viruses, including all flaviviruses (such as dengue, Zika, and yellow fever viruses) and coronaviruses (including SARS-CoV-2) 45. During coronavirus infection, VMP1 facilitates the formation of double-membrane vesicles (DMVs) that serve as viral replication organelles, functioning specifically in the closure of zippered ER membranes into DMVs 6. The protein's role in maintaining cellular phosphatidylserine and cholesterol homeostasis likely contributes to its requirement for viral replication and organelle biogenesis 1.

Sources cited
1
VMP1 is a phospholipid scramblase that regulates cholesterol and phosphatidylserine distribution
PMID: 33929485
2
VMP1 controls ER-isolation membrane contacts and autophagosome formation through SERCA activity modulation
PMID: 28890335
3
VMP1 modulates cellular lipid and energy metabolism, including mitochondrial beta-oxidation
PMID: 35939522
4
VMP1 is required for flavivirus infection including Zika and yellow fever viruses
PMID: 33338421
5
VMP1 is essential for SARS-CoV-2 and seasonal coronavirus infection
PMID: 33382968
6
VMP1 facilitates DMV formation during coronavirus infection by enabling ER membrane closure
PMID: 35536318
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.42Moderate
diabetes mellitusOpen Targets
0.32Weak
type 2 diabetes mellitusOpen Targets
0.29Weak
muscle crampOpen Targets
0.27Weak
Abdominal Aortic AneurysmOpen Targets
0.26Weak
multiple sclerosisOpen Targets
0.25Weak
anemia (phenotype)Open Targets
0.20Weak
Iron deficiency anemiaOpen Targets
0.18Weak
uterine fibroidOpen Targets
0.15Weak
monoclonal B-cell lymphocytosisOpen Targets
0.11Weak
major depressive disorderOpen Targets
0.10Weak
neoplasmOpen Targets
0.10Weak
colorectal carcinomaOpen Targets
0.08Suggestive
gliomaOpen Targets
0.08Suggestive
acute myeloid leukemiaOpen Targets
0.08Suggestive
Parkinson diseaseOpen Targets
0.08Suggestive
phototoxic dermatitisOpen Targets
0.08Suggestive
glioblastoma multiformeOpen Targets
0.08Suggestive
acute kidney injuryOpen Targets
0.08Suggestive
non-alcoholic steatohepatitisOpen Targets
0.07Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
ATG14Protein interaction100%TP53INP2Protein interaction96%PIK3C3Protein interaction71%BECN1Protein interaction71%ATG13Protein interaction71%PIK3R4Protein interaction71%
Tissue Expression6 tissues
Lung
100%
Liver
61%
Ovary
35%
Brain
24%
Bone Marrow
20%
Heart
16%
Gene Interaction Network
Click a node to explore
VMP1ATG14TP53INP2PIK3C3BECN1ATG13PIK3R4
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q96GC9
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.19Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.08 [0.04–0.19]
RankingsWhere VMP1 stands among ~20K protein-coding genes
  • #5,117of 20,598
    Most Researched94 · top quartile
  • #407of 17,882
    Most Constrained (LOEUF)0.19 · top 5%
Genes detectedVMP1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
TMEM41B Is a Pan-flavivirus Host Factor.
PMID: 33338421
Cell · 2021
1.00
2
Dysfunction of autophagy in high-fat diet-induced non-alcoholic fatty liver disease.
PMID: 37700498
Autophagy · 2024
0.90
3
Genome-Scale Identification of SARS-CoV-2 and Pan-coronavirus Host Factor Networks.
PMID: 33382968
Cell · 2021
0.80
4
USP20 deubiquitinates and stabilizes the reticulophagy receptor RETREG1/FAM134B to drive reticulophagy.
PMID: 38705724
Autophagy · 2024
0.70
5
The ER-Localized Transmembrane Protein EPG-3/VMP1 Regulates SERCA Activity to Control ER-Isolation Membrane Contacts for Autophagosome Formation.
PMID: 28890335
Mol Cell · 2017
0.60