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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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VPREB3
V-set pre-B cell surrogate light chain 3
Chromosome 22 · 22q11.23|22q11
NCBI Gene: 29802Ensembl: ENSG00000128218.8HGNC: HGNC:12710UniProt: Q9UKI3
16PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
immune responseimmunoglobulin complexextracellular regionendoplasmic reticulumplasma fibronectin deficiencycongenital enteropathy due to enteropeptidase deficiencygastric mucosal hypertrophyHereditary persistence of alpha-fetoprotein
✦AI Summary

VPREB3 (V-set pre-B cell surrogate light chain 3) is a transmembrane glycoprotein that associates with immunoglobulin mu heavy chains to form the pre-B cell receptor complex in the endoplasmic reticulum 1. During early B cell development, VPREB3 facilitates pre-BCR assembly and regulates pre-B cell expansion and allelic exclusion at the immunoglobulin heavy chain locus 1. Unlike other surrogate light chains, VPREB3 does not traffic to the cell surface but remains ER-resident, where it can bind free immunoglobulin light chains and regulate their maturation and secretion 2. VPREB3 is normally expressed in bone marrow precursor B cells and germinal center B cells 3. In disease contexts, VPREB3 expression is significantly elevated in Burkitt lymphoma (100% of cases) and diffuse large B-cell lymphomas with c-MYC translocations, making it a useful diagnostic biomarker for identifying MYC-translocated lymphomas 3. Combined VPREB3 and ID3 expression shows high sensitivity (0.77) and specificity (0.75) for Burkitt lymphoma diagnosis 4. Emerging evidence suggests non-immunological roles: VPREB3 expression correlates with aldosterone production in adrenocortical adenomas 5, and VPREB3 expression is epigenetically suppressed in diabetic nephropathy through METTL16-mediated m6A methylation, with restoration of VPREB3 alleviating kidney injury 6. VPREB3-derived peptides represent potential targets for TCR-based T cell therapies against B cell malignancies 7.

Sources cited
1
VPREB3 associates with Ig mu heavy chain in endoplasmic reticulum during pre-B cell development and regulates pre-BCR expansion and allelic exclusion
PMID: 10702669
2
VPREB3 is an ER-resident glycoprotein that binds free immunoglobulin light chains and regulates their maturation and secretion
PMID: 14670953
3
VPREB3 is expressed in precursor B cells and germinal center B cells; highly expressed in Burkitt lymphoma and c-MYC translocated lymphomas
PMID: 20823132
4
Combined VPREB3 and ID3 expression shows high sensitivity (0.77) and specificity (0.75) for Burkitt lymphoma diagnosis
PMID: 24493312
5
VPREB3 protein expression correlates with aldosterone production in adrenocortical adenomas, suggesting non-immunological roles
PMID: 25861052
6
VPREB3 expression is epigenetically suppressed in diabetic nephropathy through METTL16-mediated m6A methylation; restoration alleviates oxidative stress-induced kidney injury
PMID: 40348175
7
VPREB3-derived peptides can be recognized by TCRs and represent targets for T cell therapy against B cell malignancies
PMID: 34371177
8
VPREB3 is evolutionarily conserved across mammals and likely plays a primordial role in B cell development
PMID: 22684248
Disease Associationsⓘ20
plasma fibronectin deficiencyOpen Targets
0.07Suggestive
congenital enteropathy due to enteropeptidase deficiencyOpen Targets
0.04Suggestive
gastric mucosal hypertrophyOpen Targets
0.04Suggestive
Hereditary persistence of alpha-fetoproteinOpen Targets
0.04Suggestive
acute lymphoblastic leukemiaOpen Targets
0.03Suggestive
Congenital deficiency in alpha-fetoproteinOpen Targets
0.03Suggestive
non-small cell lung carcinomaOpen Targets
0.02Suggestive
metabolic diseaseOpen Targets
0.02Suggestive
gastric carcinomaOpen Targets
0.02Suggestive
colorectal cancerOpen Targets
0.02Suggestive
systemic juvenile idiopathic arthritisOpen Targets
0.02Suggestive
B-cell non-Hodgkins lymphomaOpen Targets
0.01Suggestive
diffuse large B-cell lymphomaOpen Targets
0.01Suggestive
bacteriemiaOpen Targets
0.01Suggestive
invasive breast ductal carcinomaOpen Targets
0.01Suggestive
lymphomaOpen Targets
0.01Suggestive
COVID-19Open Targets
0.01Suggestive
Miyoshi myopathyOpen Targets
0.01Suggestive
Burkitts lymphomaOpen Targets
0.01Suggestive
gastric cancerOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
FCGRTShared pathway100%PRG2Shared pathway100%RFX1Shared pathway100%SP2Shared pathway100%VPREB1Shared pathway100%CLEC10AShared pathway100%
Tissue Expression6 tissues
Bone Marrow
100%
Liver
19%
Brain
11%
Heart
9%
Lung
5%
Ovary
1%
Gene Interaction Network
Click a node to explore
VPREB3FCGRTPRG2RFX1SP2VPREB1CLEC10A
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q9UKI3
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.59LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.03 [0.68–1.59]
RankingsWhere VPREB3 stands among ~20K protein-coding genes
  • #15,439of 20,598
    Most Researched16
  • #15,631of 17,882
    Most Constrained (LOEUF)1.59
Genes detectedVPREB3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
VPREB3: cDNA characterization and expression in human and chromosome mapping in human and mouse.
PMID: 10702669
Cytogenet Cell Genet · 1999
1.00
2
Pre-B Lymphocyte Protein 3 (VPREB3) Expression in the Adrenal Cortex: Precedent for non-Immunological Roles in Normal and Neoplastic Human Tissues.
PMID: 25861052
Endocr Pathol · 2015
0.90
3
A VpreB3 homologue in a marsupial, the gray short-tailed opossum, Monodelphis domestica.
PMID: 22684248
Immunogenetics · 2012
0.80
4
Methyltransferase-like 16 drives diabetic nephropathy progression via epigenetic suppression of V-set pre-B cell surrogate light chain 3.
PMID: 40348175
Life Sci · 2025
0.70
5
The combined expression of VPREB3 and ID3 represents a new helpful tool for the routine diagnosis of mature aggressive B-cell lymphomas.
PMID: 24493312
Hematol Oncol · 2014
0.60