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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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VPS52
VPS52 subunit of GARP complex
Chromosome 6 · 6p21.32
NCBI Gene: 6293Ensembl: ENSG00000206286.11HGNC: HGNC:10518UniProt: A0A1U9X8S4
87PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
lysosomal transportprotein bindingsyntaxin bindingendocytic recycling
✦AI Summary

VPS52 encodes a critical subunit of two distinct protein complexes involved in intracellular membrane trafficking. As a component of the GARP (Golgi-associated retrograde protein) complex, VPS52 mediates retrograde transport from endosomes to the trans-Golgi network (TGN), which is essential for maintaining the cycling of mannose 6-phosphate receptors and proper lysosomal sorting of acid hydrolases 1. VPS52 also functions as part of the EARP (endosome-associated recycling protein) complex, promoting recycling of internalized transferrin receptors from Rab4-positive endosomes to the plasma membrane 2. The protein operates through syntaxin binding interactions and forms obligatory 1:1:1:1 complexes with other subunits 1. VPS52 dysfunction has significant clinical implications, with genetic alterations including loss of heterozygosity and stop-gain mutations found in gastric cancer, where reduced VPS52 expression correlates with poor prognosis 3. Additionally, VPS52 is required for orthopoxvirus extracellular virus formation, as knockout cells show impaired viral egress mechanisms 4. Loss-of-function variants in related genes like VPS50 demonstrate the critical importance of these trafficking complexes in neurodevelopmental disorders 5.

Sources cited
1
VPS52 is part of GARP complex mediating retrograde transport and forms 1:1:1:1 complexes with syntaxin binding
PMID: 20685960
2
VPS52 functions in EARP complex for endosome recycling and secretory cargo trafficking
PMID: 34023780
3
VPS52 genetic alterations and reduced expression in gastric cancer correlate with poor prognosis
PMID: 28791438
4
VPS52 is required for orthopoxvirus extracellular virus formation and viral egress mechanisms
PMID: 28331092
5
Related VPS genes are critical for neurodevelopmental function, demonstrating importance of trafficking complexes
PMID: 38876772
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
STX6Protein interaction100%COG5Protein interaction100%EXOC1Protein interaction100%STX10Protein interaction100%EIPR1Protein interaction93%SOAT1Protein interaction91%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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VPS52STX6COG5EXOC1STX10EIPR1SOAT1
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q4VXZ2
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.68LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.54 [0.44–0.68]
RankingsWhere VPS52 stands among ~20K protein-coding genes
  • #5,525of 20,598
    Most Researched87
  • #5,070of 17,882
    Most Constrained (LOEUF)0.68
Genes detectedVPS52
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
VPS52 induces apoptosis via cathepsin D in gastric cancer.
PMID: 28791438
J Mol Med (Berl) · 2017
1.00
2
Genetic Influence on Frequencies of Myeloid-Derived Cell Subpopulations in Mouse.
PMID: 35154069
Front Immunol · 2021
0.90
3
RNF41 interacts with the VPS52 subunit of the GARP and EARP complexes.
PMID: 28542518
PLoS One · 2017
0.80
4
Targeting Keap1/Nrf2/ARE signaling pathway in multiple sclerosis.
PMID: 32017935
Eur J Pharmacol · 2020
0.70
5
Complex structural variation and nonsense variant
PMID: 38876772
J Med Genet · 2024
0.60