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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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VTA1
vesicle trafficking 1
Chromosome 6 · 6q24.1-q24.2
NCBI Gene: 51534Ensembl: ENSG00000009844.16HGNC: HGNC:20954UniProt: A0A087WY55
92PubMed Papers
20Diseases
0Drugs
1Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
multivesicular body sorting pathwayprotein bindingextracellular exosomecytosolHIV infectionCOVID-19severe acute respiratory syndromeAbnormality of the skeletal system
✦AI Summary

VTA1 (vesicle trafficking 1) functions as a critical cofactor for the VPS4 ATPase in the endosomal sorting complex required for transport (ESCRT) system, which mediates membrane remodeling processes 1. The protein contains a Vps4 stimulatory element (VSE) that contacts specific regions of VPS4 (α7 and α9 helices) to enhance ATP hydrolysis and promote ESCRT-III complex disassembly 2. VTA1 plays essential roles in multiple cellular processes including multivesicular body sorting, cytokinetic abscission, viral budding, and membrane repair 13. In cytokinesis, VTA1 specifically regulates VPS4A-mediated abscission by disrupting VPS4A-ANCHR interactions, with VTA1 depletion accelerating the abscission process 4. The protein demonstrates anti-viral properties, as evidenced by its identification as a host factor controlling SARS-CoV-2 infection through integrated multi-omics analyses 5. Clinically, VTA1 shows potential as a prognostic biomarker, with high expression correlating with poor outcomes in lung adenocarcinoma patients and association with advanced tumor stages 6. Additionally, genetic variants near VTA1 have been associated with lacunar stroke risk through genome-wide association studies 7.

Sources cited
1
VTA1 is part of the ESCRT machinery and involved in membrane remodeling processes
PMID: 20653365
2
VTA1's VSE domain contacts VPS4 α7 and α9 helices to stimulate ATP hydrolysis
PMID: 25164817
3
VTA1 regulates cytokinetic abscission by modulating VPS4A-ANCHR interactions
PMID: 38687820
4
VTA1 is involved in viral budding and membrane shedding processes
PMID: 34445766
5
VTA1 functions as an anti-viral host factor controlling SARS-CoV-2 infection
PMID: 38168026
6
High VTA1 expression correlates with poor prognosis in lung adenocarcinoma
PMID: 38372114
7
Genetic variants near VTA1 are associated with lacunar stroke risk
PMID: 33773637
Disease Associationsⓘ20
HIV infectionOpen Targets
0.46Moderate
COVID-19Open Targets
0.21Weak
severe acute respiratory syndromeOpen Targets
0.21Weak
Abnormality of the skeletal systemOpen Targets
0.15Weak
MenorrhagiaOpen Targets
0.11Weak
peptic ulcer diseaseOpen Targets
0.10Weak
connective tissue neoplasmOpen Targets
0.10Weak
corneal ulcerOpen Targets
0.09Suggestive
neoplasmOpen Targets
0.08Suggestive
prostate cancerOpen Targets
0.08Suggestive
thyroid cancerOpen Targets
0.07Suggestive
metabolic syndromeOpen Targets
0.07Suggestive
frozen shoulderOpen Targets
0.07Suggestive
cervical carcinomaOpen Targets
0.07Suggestive
cancerOpen Targets
0.05Suggestive
infectionOpen Targets
0.05Suggestive
laryngeal squamous cell carcinomaOpen Targets
0.04Suggestive
major depressive disorderOpen Targets
0.04Suggestive
bacterial vaginosisOpen Targets
0.03Suggestive
smoking initiationOpen Targets
0.03Suggestive
Pathogenic Variants1
NM_016485.5(VTA1):c.52C>T (p.Gln18Ter)Likely pathogenic
not specified
★☆☆☆2024→ Residue 18
View on ClinVar ↗
Related Genes
CHMP3Protein interaction100%CHMP6Protein interaction100%CHMP1BProtein interaction99%CHMP4CProtein interaction97%RNF103-CHMP3Protein interaction97%CHMP7Protein interaction97%
Tissue Expression6 tissues
Brain
100%
Heart
58%
Bone Marrow
33%
Liver
32%
Lung
24%
Ovary
20%
Gene Interaction Network
Click a node to explore
VTA1CHMP3CHMP6CHMP1BCHMP4CRNF103-CHMP3CHMP7
PROTEIN STRUCTURE
Preparing viewer…
PDB4TXR · 1.00 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.90LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.62 [0.43–0.90]
RankingsWhere VTA1 stands among ~20K protein-coding genes
  • #5,225of 20,598
    Most Researched92
  • #4,914of 5,498
    Most Pathogenic Variants1
  • #8,087of 17,882
    Most Constrained (LOEUF)0.90
Genes detectedVTA1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
The human AAA-ATPase VPS4A isoform and its co-factor VTA1 have a unique function in regulating mammalian cytokinesis abscission.
PMID: 38687820
PLoS Biol · 2024
1.00
2
Genetic basis of lacunar stroke: a pooled analysis of individual patient data and genome-wide association studies.
PMID: 33773637
Lancet Neurol · 2021
0.90
3
The ESCRT complexes.
PMID: 20653365
Crit Rev Biochem Mol Biol · 2010
0.80
4
MIT domainia.
PMID: 18194647
Dev Cell · 2008
0.70
5
Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection.
PMID: 38168026
Nat Commun · 2024
0.60