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GeneE
25 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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VTCN1
V-set domain containing T cell activation inhibitor 1
Chromosome 1 · 1p13.1-p12
NCBI Gene: 79679Ensembl: ENSG00000134258.19HGNC: HGNC:28873UniProt: Q7Z7D3
172PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
RESEARCH IMPACT
Trending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
negative regulation of apoptotic processprotein bindingnegative regulation of T cell activationexternal side of plasma membranealcohol drinkingperipheral vascular diseaseAnxietykidney disease
✦AI Summary

VTCN1 (B7-H4) is an immune checkpoint molecule that negatively regulates T cell-mediated immunity. Structurally, it contains a V-set domain and localizes to the plasma membrane, where it inhibits T cell activation, proliferation, and cytokine production 1. Mechanistically, VTCN1 suppresses CD8+ T cell function, possibly through Eomes overexpression, and its expression on tumor-associated myeloid cells correlates with T cell exhaustion 2. In cancer, VTCN1 represents a critical immune evasion mechanism, particularly in triple-negative breast cancer (TNBC) and immune-cold tumors, where it inversely correlates with PD-L1 expression [PMID:25208879; 36]. Progesterone upregulates VTCN1 in breast cancer and placental cells through the PR-P300-BRD4 axis, linking female hormones to onco-fetal immune tolerance 1. Post-translational modifications regulate VTCN1 stability: palmitoylation by ZDHHC3 prevents lysosomal degradation and maintains immunosuppression, while glycosylation inhibition promotes ubiquitination-dependent degradation [PMID:40341398; 36]. Clinically, elevated VTCN1 associates with worse outcomes in small cell lung cancer 4. Therapeutic strategies include VTCN1-targeted antibody-drug conjugates (XMT-1660), CDK4/6 inhibitors promoting B7-H4 degradation, glycosylation inhibitors, and combinatorial PD-1/VTCN1 blockade, demonstrating superior anti-tumor efficacy [PMID:37294948; 5; 36].

Sources cited
1
Structurally, it contains a V-set domain and localizes to the plasma membrane, where it inhibits T cell activation, proliferation, and cytokine production .
PMID: 38968937
2
Mechanistically, VTCN1 suppresses CD8+ T cell function, possibly through Eomes overexpression, and its expression on tumor-associated myeloid cells correlates with T cell exhaustion .
PMID: 29625896
3
Clinically, elevated VTCN1 associates with worse outcomes in small cell lung cancer .
PMID: 30850021
⚠Limited data available — This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
alcohol drinkingOpen Targets
0.39Weak
peripheral vascular diseaseOpen Targets
0.31Weak
AnxietyOpen Targets
0.24Weak
kidney diseaseOpen Targets
0.24Weak
obstructive sleep apneaOpen Targets
0.19Weak
neoplasmOpen Targets
0.12Weak
colorectal carcinomaOpen Targets
0.11Weak
hepatocellular carcinomaOpen Targets
0.11Weak
breast cancerOpen Targets
0.10Weak
non-small cell lung carcinomaOpen Targets
0.10Weak
triple-negative breast cancerOpen Targets
0.10Weak
toxoplasmosisOpen Targets
0.09Suggestive
gliomaOpen Targets
0.09Suggestive
urinary bladder carcinomaOpen Targets
0.09Suggestive
gastric cancerOpen Targets
0.09Suggestive
esophageal squamous cell carcinomaOpen Targets
0.09Suggestive
colorectal cancerOpen Targets
0.08Suggestive
systemic lupus erythematosusOpen Targets
0.08Suggestive
head and neck squamous cell carcinomaOpen Targets
0.08Suggestive
intrahepatic cholangiocarcinomaOpen Targets
0.08Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
LOC102723996Protein interaction100%CD86Protein interaction100%CD28Protein interaction98%PDCD1LG2Protein interaction97%PDCD1Protein interaction83%TNFRSF14Protein interaction83%
Tissue Expression6 tissues
Liver
100%
Heart
57%
Ovary
29%
Brain
6%
Lung
5%
Bone Marrow
3%
Gene Interaction Network
Click a node to explore
VTCN1LOC102723996CD86CD28PDCD1LG2PDCD1TNFRSF14
PROTEIN STRUCTURE
Preparing viewer…
PDB4GOS · 1.59 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.32LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.95 [0.70–1.32]
RankingsWhere VTCN1 stands among ~20K protein-coding genes
  • #2,571of 20,598
    Most Researched172 · top quartile
  • #13,852of 17,882
    Most Constrained (LOEUF)1.32
Genes detectedVTCN1
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
Progestogen-driven B7-H4 contributes to onco-fetal immune tolerance.
PMID: 38968937
Cell · 2024
1.00
2
Comprehensive genomic analysis identifies novel subtypes and targets of triple-negative breast cancer.
PMID: 25208879
Clin Cancer Res · 2015
0.90
3
Palmitoylation prevents B7-H4 lysosomal degradation sustaining tumor immune evasion.
PMID: 40341398
Nat Commun · 2025
0.80
4
Discovery and Preclinical Characterization of XMT-1660, an Optimized B7-H4-Targeted Antibody-Drug Conjugate for the Treatment of Cancer.
PMID: 37294948
Mol Cancer Ther · 2023
0.70
5
A B7-H4-Targeting Antibody-Drug Conjugate Shows Antitumor Activity in PARPi and Platinum-Resistant Cancers with B7-H4 Expression.
PMID: 37882675
Clin Cancer Res · 2024
0.68