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50 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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PDCD1
programmed cell death 1
Chromosome 2 · 2q37.3
NCBI Gene: 5133Ensembl: ENSG00000188389.12HGNC: HGNC:8760UniProt: A0A0M3M0G7
1,253PubMed Papers
1Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
RESEARCH IMPACT
Highly Studied
CLINICAL
OMIM Disease Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingtransmembrane signaling receptor activitysignaling receptor activitynegative regulation of T cell mediated immune response to tumor cellAutoimmune disease, multisystem, infantile-onset, 4
✦AI Summary

PDCD1 (programmed cell death 1) encodes an inhibitory immune checkpoint receptor that negatively regulates T cell-mediated anti-tumor immunity. PDCD1 interacts with its ligand CD274/PDCD1L1 to inhibit cytotoxic T lymphocyte effector function, thereby suppressing anti-tumor immune responses 1. Tumors exploit this PDCD1-mediated inhibitory pathway to evade immune destruction and facilitate survival 1. Blockade of PDCD1 signaling reverses T cell exhaustion and restores anti-tumor immunity, providing rationale for PD-1 checkpoint immunotherapy 234. Beyond cancer, PDCD1 polymorphisms are associated with multiple autoimmune conditions. Genetic variants rs2227982 and rs2227981 increase type 1 diabetes risk in East Asians 5, while rs10204525 associates with polyarticular juvenile idiopathic arthritis 6. In ankylosing spondylitis, PDCD1 promoter hypermethylation correlates with reduced gene expression and disease severity markers 7. PDCD1 polymorphisms also influence cutaneous melanoma risk and prognosis through altered T lymphocyte regulation 8. Pan-cancer analysis demonstrates PDCD1 expression correlates with tumor mutational burden, microsatellite instability, and immune cell infiltration, serving as a prognostic marker across multiple cancer types 9. These findings highlight PDCD1's critical dual role in cancer immunity and autoimmune disease pathogenesis.

Sources cited
1
PDCD1-CD274/PDCD1L1 interaction inhibits CTL effector function and tumors exploit this pathway to evade immunity
PMID: 28951311
2
PDCD1 pathway blockade reverses T cell exhaustion and normalizes anti-tumor response
PMID: 22658127
3
PDCD1 blockade provides rationale for cancer immunotherapy
PMID: 25034862
4
PDCD1 pathway blockade reverses exhausted T cell phenotype
PMID: 25399552
5
PDCD1 polymorphisms rs2227982 and rs2227981 associate with type 1 diabetes risk in East Asians
PMID: 29774466
6
PDCD1 rs10204525 variant associates with polyarticular juvenile idiopathic arthritis and anti-CCP antibodies
PMID: 32163016
7
PDCD1 promoter hypermethylation and reduced expression occur in ankylosing spondylitis and correlate with disease markers
PMID: 36707702
8
PDCD1 polymorphisms influence T lymphocyte regulation, cutaneous melanoma risk, and prognosis
PMID: 29090522
9
PDCD1 expression correlates with tumor mutational burden, microsatellite instability, and immune infiltration across cancer types
PMID: 33069926
Disease Associationsⓘ1
Autoimmune disease, multisystem, infantile-onset, 4UniProt
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CD8AProtein interaction100%IFNGProtein interaction99%LGALS9CProtein interaction99%LGALS9BProtein interaction99%CD247Protein interaction99%FOXP3Protein interaction98%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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PDCD1CD8AIFNGLGALS9CLGALS9BCD247FOXP3
PROTEIN STRUCTURE
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PDB6UMU · 1.18 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.89LoF Tolerant
pLIⓘ
0.03Tolerant
Observed/Expected LoF0.53 [0.32–0.89]
RankingsWhere PDCD1 stands among ~20K protein-coding genes
  • #115of 20,598
    Most Researched1,253 · top 1%
  • #7,986of 17,882
    Most Constrained (LOEUF)0.89
Genes detectedPDCD1
Sources retrieved50 papers
Response time—
📄 Sources
50▼
1
Tumor Mutational Burden and Response Rate to PD-1 Inhibition.
PMID: 29262275
N Engl J Med · 2017
1.00
2
Epigenetic and Genetic Regulation of PDCD1 Gene in Cancer Immunology.
PMID: 30178256
Methods Mol Biol · 2018
0.90
3
PDCD1, CTLA-4 and p53 gene polymorphism and susceptibility to gestational trophoblastic diseases.
PMID: 19263877
J Reprod Med · 2009
0.84
4
[Not Available].
PMID: 30595196
Bull Cancer · 2018
0.82
5
Rs2227982 and rs2227981 in PDCD1 gene are functional SNPs associated with T1D risk in East Asian.
PMID: 29774466
Acta Diabetol · 2018
0.80