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3 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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LGALS9C
galectin 9C
Chromosome 17 · 17p11.2
NCBI Gene: 654346Ensembl: ENSG00000171916.17HGNC: HGNC:33874UniProt: J3KSY2
16PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindinggalactoside bindingcarbohydrate bindingpositive regulation of gene expression
✦AI Summary

LGALS9C (galectin 9C) is a galactoside-binding protein located on chromosome 17 that functions as a carbohydrate-binding molecule with immunoregulatory properties. The protein binds galactosides and is involved in negative regulation of CD4-positive, alpha-beta T cell proliferation [GO annotations] and negative regulation of type II interferon production, suggesting a role in immune suppression. LGALS9C is expressed in both cytosolic and nuclear compartments where it can modulate gene expression [GO annotations]. In cancer biology, LGALS9C has emerged as a clinically relevant immunomodulator. In EGFR-mutated lung adenocarcinomas with high PD-L1 expression, LGALS9C is upregulated in immune cell compartments alongside other inhibitory immunomodulators (CD276, HAVCR2), contributing to an immunosuppressive microenvironment characterized by increased T regulatory cell infiltration 1. Additionally, LGALS9C was identified as a tumor suppressor gene with copy number loss in a pancreatic adenocarcinoma case associated with Shwachman-Diamond syndrome 2. Epigenomic studies have revealed associations between LGALS9C DNA methylation and metabolic phenotypes; region-based methylation analysis identified LGALS9C as significantly associated with triglyceride level changes in response to fenofibrate treatment 3, suggesting potential involvement in lipid metabolism regulation.

Sources cited
1
LGALS9C is upregulated in immune cell compartments of high PD-L1 EGFR-mutated lung adenocarcinomas and functions as an inhibitory immunomodulator contributing to immunosuppression
PMID: 41430030
2
LGALS9C functions as a tumor suppressor gene with copy number loss in pancreatic adenocarcinoma associated with Shwachman-Diamond syndrome
PMID: 23303473
3
LGALS9C DNA methylation is associated with changes in triglyceride levels in response to fenofibrate treatment
PMID: 30263044
⚠Limited data available — This gene has 3 indexed publications. Summary and analysis may be incomplete.
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
LGALS9BShared pathway100%CTLA4Protein interaction99%TNFRSF9Protein interaction99%LAG3Protein interaction99%PDCD1Protein interaction99%TNFRSF14Protein interaction99%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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LGALS9CLGALS9BCTLA4TNFRSF9LAG3PDCD1TNFRSF14
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q6DKI2
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.55Moderately Constrained
pLIⓘ
0.93Intolerant
Observed/Expected LoF0.28 [0.15–0.55]
RankingsWhere LGALS9C stands among ~20K protein-coding genes
  • #15,300of 20,598
    Most Researched16
  • #3,554of 17,882
    Most Constrained (LOEUF)0.55 · top quartile
Genes detectedLGALS9C
Sources retrieved3 papers
Response time—
📄 Sources
3
1
Molecular characteristics of a pancreatic adenocarcinoma associated with Shwachman-Diamond syndrome.
PMID: 23303473
Pediatr Blood Cancer · 2013
1.00
2
Spatially resolved whole-transcriptomic profiling of EGFR-mutated lung adenocarcinomas stratified by PD-L1 expression.
PMID: 41430030
Cell Oncol (Dordr) · 2025
0.67
3
CpG-set association assessment of lipid concentration changes and DNA methylation.
PMID: 30263044
BMC Proc · 2018
0.33