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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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WDR43
WD repeat domain 43
Chromosome 2 · 2p23.2
NCBI Gene: 23160Ensembl: ENSG00000163811.13HGNC: HGNC:28945UniProt: Q15061
96PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedHub GeneTranscription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
ribosomal small subunit biogenesispositive regulation of transcription by RNA polymerase IRNA bindingpositive regulation of rRNA processingtriple-negative breast cancerbreast carcinomagoutluminal A breast carcinoma
✦AI Summary

WDR43 (WD repeat domain 43) is a multifunctional protein with dual roles in ribosome biogenesis and transcriptional regulation. Primarily, WDR43 functions as a ribosome biogenesis factor essential for small subunit (SSU) processome assembly and nucleolar processing of pre-18S ribosomal RNA 1. It is required for optimal pre-rRNA transcription by RNA polymerase I 12 and coordinates hyperactive transcription with ribogenesis 1. Beyond its classical role, WDR43 acts as a chr2-associated RNA-binding protein recruited by nascent transcripts to active promoters, where it facilitates P-TEFb release and RNA polymerase II elongation to maintain high-level gene expression 3. WDR43 is essential for stem cell pluripotency and embryonic development 4. In disease contexts, WDR43 is significantly elevated in multiple cancers. In colorectal cancer (CRC), overexpression promotes chemoresistance and tumor growth by enhancing p53 ubiquitination through MDM2 interaction 5, while also promoting cell survival via vimentin regulation 6. In non-small cell lung cancer, elevated WDR43 drives malignant progression by interacting with CDK2 7. In acute myeloid leukemia, WDR43 is synthesized through codon-biased translation driven by ALKBH1, promoting leukemogenesis and drug resistance 8. WDR43 is also identified as a hub gene in pulmonary arterial hypertension pathogenesis 9.

Sources cited
1
WDR43 coordinates hyperactive transcription and ribogenesis; required for optimal pre-rRNA transcription by RNA polymerase I
PMID: 17699751
2
WDR43 required for optimal pre-ribosomal RNA transcription by RNA polymerase I
PMID: 34516797
3
WDR43 acts as chromatin-associated RNA-binding protein recruited by nascent transcripts to promote RNA polymerase II elongation and pluripotency
PMID: 31128943
4
WDR43 essential for stem cell pluripotency and embryonic development; important in craniofacial development
PMID: 27221611
5
WDR43 overexpression promotes colorectal cancer chemoresistance and tumor growth by enhancing p53 ubiquitination via MDM2
PMID: 36525936
6
WDR43 promotes colorectal cancer cell survival, proliferation, migration and invasion via vimentin regulation
PMID: 34372874
7
WDR43 promotes non-small cell lung cancer progression by regulating CDK2
PMID: 36041702
8
WDR43 is synthesized through codon-biased translation and drives acute myeloid leukemia tumorigenesis and drug resistance
PMID: 40747882
9
WDR43 identified as hub gene in pulmonary arterial hypertension pathogenesis
PMID: 38110868
10
WDR43 is an accessory snoRNA-binding protein involved in ribosome and spliceosome biogenesis
PMID: 40001124
Disease Associationsⓘ20
triple-negative breast cancerOpen Targets
0.31Weak
breast carcinomaOpen Targets
0.31Weak
goutOpen Targets
0.27Weak
luminal A breast carcinomaOpen Targets
0.26Weak
mood disorderOpen Targets
0.25Weak
neurodegenerative diseaseOpen Targets
0.12Weak
neoplasmOpen Targets
0.08Suggestive
colorectal carcinomaOpen Targets
0.08Suggestive
cancerOpen Targets
0.08Suggestive
adrenal cortex carcinomaOpen Targets
0.04Suggestive
coronary atherosclerosisOpen Targets
0.03Suggestive
pancreatic adenocarcinomaOpen Targets
0.03Suggestive
Parkinson diseaseOpen Targets
0.02Suggestive
dental cariesOpen Targets
0.02Suggestive
tooth diseaseOpen Targets
0.02Suggestive
denturesOpen Targets
0.02Suggestive
pulmonary arterial hypertensionOpen Targets
0.02Suggestive
ankylosing spondylitisOpen Targets
0.02Suggestive
lung adenocarcinomaOpen Targets
0.02Suggestive
non-small cell lung carcinomaOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
MCCProtein interaction100%NOP14Protein interaction100%BMS1Protein interaction100%KRR1Protein interaction100%PDCD11Protein interaction100%NOP58Protein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
44%
Lung
42%
Heart
40%
Liver
39%
Brain
37%
Gene Interaction Network
Click a node to explore
WDR43MCCNOP14BMS1KRR1PDCD11NOP58
PROTEIN STRUCTURE
Preparing viewer…
PDB7MQA · 2.70 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.24Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.15 [0.09–0.24]
RankingsWhere WDR43 stands among ~20K protein-coding genes
  • #5,012of 20,598
    Most Researched96 · top quartile
  • #704of 17,882
    Most Constrained (LOEUF)0.24 · top 5%
Genes detectedWDR43
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
The c-MYC-WDR43 signalling axis promotes chemoresistance and tumour growth in colorectal cancer by inhibiting p53 activity.
PMID: 36525936
Drug Resist Updat · 2023
1.00
2
ALKBH1 Drives Tumorigenesis and Drug Resistance via tRNA-decoding Reprogramming and Codon-biased Translation.
PMID: 40747882
Cancer Discov · 2025
0.90
3
Identification of hub genes based on integrated analysis of single-cell and microarray transcriptome in patients with pulmonary arterial hypertension.
PMID: 38110868
BMC Genomics · 2023
0.80
4
Mapping snoRNA-target RNA interactions in an RNA-binding protein-dependent manner with chimeric eCLIP.
PMID: 40001124
Genome Biol · 2025
0.70
5
The Contributions of the Ribosome Biogenesis Protein Utp5/WDR43 to Craniofacial Development.
PMID: 27221611
J Dent Res · 2016
0.60