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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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WNT16
Wnt family member 16
Chromosome 7 · 7q31.31
NCBI Gene: 51384Ensembl: ENSG00000002745.13HGNC: HGNC:16267UniProt: E9PH60
54PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transductionWnt signaling pathwayreplicative senescenceoxidative stress-induced premature senescencebone fractureupper extremity fractureosteoporosisfoot fracture
✦AI Summary

WNT16 is a secreted Wnt ligand that functions as a positive regulator of bone homeostasis and a protective regulator against osteoarthritis progression 1. As a member of the Wnt family, WNT16 signals through frizzled receptors to activate both canonical and non-canonical Wnt signaling pathways 2. In bone metabolism, osteoblasts secrete WNT16 to suppress osteoclast differentiation and promote bone formation 3. Osteocyte-specific WNT16 overexpression significantly increases cortical and trabecular bone mass, bone strength, and expression of osteoblast markers including alkaline phosphatase and osteocalcin 4. Genome-wide association studies identified WNT16 as the strongest genetic determinant of forearm fracture risk, with bone-site-specific effects 5. Beyond skeletal biology, WNT16 expression is dysregulated in cancer contexts: it is upregulated in gastric adenocarcinoma 6 and downregulated in nodular basal cell carcinoma 7. In osteoblast differentiation on biomimetic implants, WNT16 promotes cell proliferation while inhibiting differentiation through microRNA-145-mediated feedback mechanisms 2. These findings establish WNT16 as a promising therapeutic target for skeletal diseases including osteoporosis and osteoarthritis.

Sources cited
1
WNT16 is a positive regulator of bone mass and protective regulator of osteoarthritis progression; associated with bone mineral density, cortical bone thickness, and fracture risk
PMID: 36619549
2
Osteoblasts produce WNT16 as a secretory molecule that regulates osteoclast differentiation and development
PMID: 32927921
3
Osteocyte-specific WNT16 overexpression increases cortical and trabecular bone mass, bone strength, and osteoblast marker expression
PMID: 28013361
4
WNT16 is the strongest genetic determinant of forearm fracture risk with bone-site-specific effects
PMID: 37919453
5
WNT16 activates non-canonical Wnt signaling; promotes MSC proliferation while inhibiting osteoblast differentiation through miR-145-mediated feedback
PMID: 39937002
6
WNT16 gene expression is significantly upregulated in gastric adenocarcinoma tumoral tissues
PMID: 29110228
7
WNT16 expression is significantly downregulated in nodular basal cell carcinoma compared to normal skin
PMID: 27630294
Disease Associationsⓘ20
bone fractureOpen Targets
0.52Moderate
upper extremity fractureOpen Targets
0.51Moderate
osteoporosisOpen Targets
0.48Moderate
foot fractureOpen Targets
0.47Moderate
bone diseaseOpen Targets
0.44Moderate
ankle fractureOpen Targets
0.41Moderate
Abnormality of the skeletal systemOpen Targets
0.34Weak
ulna fractureOpen Targets
0.33Weak
radius fractureOpen Targets
0.33Weak
wrist fractureOpen Targets
0.31Weak
tibia fractureOpen Targets
0.31Weak
HypocalcemiaOpen Targets
0.30Weak
response to antihypertensive drugOpen Targets
0.27Weak
poisoningOpen Targets
0.12Weak
post term pregnancyOpen Targets
0.11Weak
asthmaOpen Targets
0.09Suggestive
Umbilical herniaOpen Targets
0.09Suggestive
musculoskeletal system diseaseOpen Targets
0.08Suggestive
sialolithiasisOpen Targets
0.07Suggestive
response to xenobiotic stimulusOpen Targets
0.06Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
WNT1Protein interaction98%PORCNProtein interaction95%WNT3AProtein interaction95%WNT4Protein interaction95%NOTUMProtein interaction94%GPC3Protein interaction92%
Tissue Expression6 tissues
Brain
100%
Liver
51%
Lung
39%
Bone Marrow
21%
Ovary
15%
Heart
9%
Gene Interaction Network
Click a node to explore
WNT16WNT1PORCNWNT3AWNT4NOTUMGPC3
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q9UBV4
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.80LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.55 [0.39–0.80]
RankingsWhere WNT16 stands among ~20K protein-coding genes
  • #8,387of 20,598
    Most Researched54
  • #6,706of 17,882
    Most Constrained (LOEUF)0.80
Genes detectedWNT16
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Osteoblast-Osteoclast Communication and Bone Homeostasis.
PMID: 32927921
Cells · 2020
1.00
2
Wnt16 signaling in bone homeostasis and osteoarthristis.
PMID: 36619549
Front Endocrinol (Lausanne) · 2022
0.90
3
A senescence-based prognostic gene signature for colorectal cancer and identification of the role of SPP1-positive macrophages in tumor senescence.
PMID: 37090726
Front Immunol · 2023
0.80
4
Non-Canonical Wnt16 and microRNA-145 Mediate the Response of Human Bone Marrow Stromal Cells to Additively Manufactured Porous 3-Dimensional Biomimetic Titanium-Aluminum-Vanadium Constructs.
PMID: 39937002
Cells · 2025
0.70
5
Regulatory Fluctuation of WNT16 Gene Expression Is Associated with Human Gastric Adenocarcinoma.
PMID: 29110228
J Gastrointest Cancer · 2019
0.60